Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2253 ATGAGTCAGAAAGGAACAATAATGAACGAAACACCAAAAAACCATTTCTCAGAGACCGTACCATCTAAATCTATCCACGCACACCAATCTCCTCTCATCTCTATGTTCTCTTTTCTTCTTTTGTTTTCTGCAATGGAAGACGACCCTTTTCTCACAACCACTTCCCAACGCGCCGATTTCCTCTTGCAATCTTCCAAGTCCTTCGACGACGTCACCGCCCCACGCGCCGCCCGTAACGCCGAGATTCAAGAGCACCTGTCCCAACCCTCTCCCTTTCACCCCAAGAAGAAAAAACTCAGTCGTTGCAAGACAGCACCCGCCATGGTTACCATGCGAGACCTCAAACCCAAGTCGCCCCAACTCCCCAAGCCTCAGTCCAGTTCCATAATCCGACAAGCCATGTGCTTACTCGCCATGTACCTCTGCGTCGGAGTCGCCATTTACTCTTTCAACAGGGACCATTTCTCCGGCATCGAGACCCACCCTGTGGTCGATGCTCTTTACTTCTGTATAGTTACCATGTGTACCATAGGATACGGAGACATCGCTCCCTTGACCCCACTTACAAAGGTCTTCGCTTGCGTGTTTGTGCTGGTGGGGTTCGGCTTCATAGACATACTCCTCAGTGGGCTTGTTAATTTTGTTTTGGATGTGCAAGAGAACATGATCCTTACGGGGCTCCAAATGGGTGCAACTGGGAGGGAGGGGTTTTCTGCCAGGAACTACATAGTTGATGTGGTGAAGGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGGGTTGTGGTGCTGTGTATTGGGATTGGGAGTTTGGTGTTGTACTTTGTGGAGGGTTTGGATTGGGTTGATTCTATTTACTTGTCGGTTATGTCTGTCACAACGGTTGGCTATGGGGACAGGGCGTTTAAGACACTTCCCGGTCGCTTATTTGCTGCTATTTGGTTGCTCTTTTCTACTTTGATGGTGGCACGGGCTTTCCTTTATTTGGCAGAGGCCAGAATTAATAGAAGGCATCGCAGAATGGCCAACAAGGTCTTGCAAAGAGAAATTACTGTTGAGGATTTGCTTGCTGCTGATATCAACCACACTGGTTTCATCAGCAAGTCTGAGTATGTAATCTTCAAGCTGAAAGAAATGGGTAAAATACATGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCTAACTGTGGGAAGATAACACTACCTCATCTCTTAGAGGACACTTTCTAG 1254 0.4769 MSQKGTIMNETPKNHFSETVPSKSIHAHQSPLISMFSFLLLFSAMEDDPFLTTTSQRADFLLQSSKSFDDVTAPRAARNAEIQEHLSQPSPFHPKKKKLSRCKTAPAMVTMRDLKPKSPQLPKPQSSSIIRQAMCLLAMYLCVGVAIYSFNRDHFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGATGREGFSARNYIVDVVKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARINRRHRRMANKVLQREITVEDLLAADINHTGFISKSEYVIFKLKEMGKIHEKDVLQICDQFRKLDPSNCGKITLPHLLEDTF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2253 417 PRINTS Two pore domain K+ channel signature 172 200 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pvu1g2253 417 PRINTS Two pore domain K+ channel signature 295 304 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pvu1g2253 417 SUPERFAMILY Voltage-gated potassium channels 247 355 - -
Pvu1g2253 417 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Pvu1g2253 417 SUPERFAMILY EF-hand 359 412 IPR011992 -
Pvu1g2253 417 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 80 412 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pvu1g2253 417 Gene3D - 239 360 - -
Pvu1g2253 417 Gene3D - 111 225 - -
Pvu1g2253 417 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 80 412 - -
Pvu1g2253 417 SUPERFAMILY Voltage-gated potassium channels 129 219 - -
Pvu1g2253 417 Pfam Ion channel 265 333 IPR013099 -
Pvu1g2253 417 Pfam Ion channel 137 215 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2253 Pvu-Chr1 48057671 48060252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2253 65 415 Ion Channels AT4G01840 65.826 8.04e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2253 K05389 - gmx:100780438 615.92