Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2248 ATGTCTGGAAAAATAATTATCTCTGCTGTTTCTCTCATCCTCGTGGTAGGAGTTGCAATCGGTGTTGTGGTTACCGTTAACAAGAGAGGTGAGGAAACCGGCATCCAAACCAACCAAAAATCCGTTGAGATTATCTGTCAAAACACCGATGACCAAAAACTCTGCCATGACACTCTTAGCTCCGTCAAGGGTCTTGACACCGCTGACCCCAAGGCATACATCGCCACGGCGGTGAAAGCCACCATGGACAGCGTGATCAAAGCATTTAACATGAGTGACCGGCTCACAACCGAGCACGGAGACAATGCCAGCGGCACTAAGATGGCCCTTGATGATTGCAAGGACCTGTTGCAATCCGCCATCCAGAGTCTTCAGCTCAGCACTGACATGGTGCAAAATAACAACGTCCAAGCCGTGCATGACCAAACTGCTGATTTCAAGAATTGGCTTAGTGCGGTTATCTCGTACCAGCAGGCGTGCATGGAGGGTTTCGACGATGGCAACGAAGGTGAGAAGAAGATCAAAGAGCAGTTGCATACAGGGAGCTTAGACCAGGTGCAGAAACTCACCGCCATCACTCTTGATATCGTGAGTAGTTTGTCACACATCCTCGAGAAGTTCGGGTTGAAGTTAAACCTTAAACCGGCCTCCCGTCGTCTTCTTAGCAAGGATGGGTACCCTTCTTGGTTCTCTGCCTCAGACCGCAAGCTCTTGGCTCAGCTTGAACGTAAAGGATGGAGATCAAGCATCACACCCAATGTGGTTGTTGCCCAGGACGGTTCTGGCCAGTTCAAAACCATTGCCGAAGGACTTGCTTCTTACCCTAGCAACTTCCAGGGTAGATATAACATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACTGTTCCCAAGAGCGCCGTCAATGTTCTCCTCTACGGTGATGGCCCTGAAAAGACCATTGTCACAGGTCACAAGAACTTCCGTGATGGTGTCAAGACAATGCAAACTGCCACTTTTGCCAACACTGCTCAAGGCTTCATTGCTAAGGCCATGACCTTTGAGAACACTGCCGGACCTGATGGACACCAAGCCGTGGCTTTCAGGAACCAGGGAGATATGTCAGCAGTGATTGGTTGCCACATTTTGGGTTACCAAGATACCTTGTACGTCCAAACCAACAGGCAATTCTACCGCAACTGCGTTATCTCCGGAACCATTGACTTCATCTTCGGCACCTCACCCACCGTGATCCAGCATTCCGTCATCATCGCCAGGAAGCCCCTTGACAACCAGTTCAACACCGTTACAGCCGACGGCACATCCGCAAAGAACATGGACACAGGAATCGTTCTCCAGGACTGCGAGATTATACCCGAAGCCGAGCTCTTCCCAGTGAGGTTCCAATTCAAGTCGTACTTGGGCAGGCCATGGAAGCAATACTCAAGGACGGTGGTGATGGAATCTAACATCGGTGACTTCCTTCACCCCGAAGGATGGTGCCCTTGGATAGGCGAAAACTTCGAAGACACTTTGTACTATGCTGAGTACAACAACGCTGGACCTGGTGCCGCCGTGAATGGAAGGATCAAGTGGAAGGGTTACCGTGGTCTTATTTCCCGCGAAGAAGCTGCTCAGTTCACCGCTGGCCAGTTCCTCCAGGCTGGACTTGGCTCTGGAACCGACTGGTTGAAGGCTCTTCGTGTTCCTCATGTCCTTGACTTCGCCAAAGCTTAA 1719 0.5044 MSGKIIISAVSLILVVGVAIGVVVTVNKRGEETGIQTNQKSVEIICQNTDDQKLCHDTLSSVKGLDTADPKAYIATAVKATMDSVIKAFNMSDRLTTEHGDNASGTKMALDDCKDLLQSAIQSLQLSTDMVQNNNVQAVHDQTADFKNWLSAVISYQQACMEGFDDGNEGEKKIKEQLHTGSLDQVQKLTAITLDIVSSLSHILEKFGLKLNLKPASRRLLSKDGYPSWFSASDRKLLAQLERKGWRSSITPNVVVAQDGSGQFKTIAEGLASYPSNFQGRYNIYVKAGVYDEYITVPKSAVNVLLYGDGPEKTIVTGHKNFRDGVKTMQTATFANTAQGFIAKAMTFENTAGPDGHQAVAFRNQGDMSAVIGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTVIQHSVIIARKPLDNQFNTVTADGTSAKNMDTGIVLQDCEIIPEAELFPVRFQFKSYLGRPWKQYSRTVVMESNIGDFLHPEGWCPWIGENFEDTLYYAEYNNAGPGAAVNGRIKWKGYRGLISREEAAQFTAGQFLQAGLGSGTDWLKALRVPHVLDFAKA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2248 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 199 IPR006501 GO:0004857
Pvu1g2248 572 PANTHER PECTINESTERASE 3 567 - -
Pvu1g2248 572 SMART PMEI_2 37 196 IPR006501 GO:0004857
Pvu1g2248 572 CDD PMEI-like_3 45 201 - -
Pvu1g2248 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Pvu1g2248 572 SUPERFAMILY Pectin lyase-like 250 551 IPR011050 -
Pvu1g2248 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Pvu1g2248 572 PANTHER PECTINESTERASE 3 567 - -
Pvu1g2248 572 Gene3D - 247 568 IPR012334 -
Pvu1g2248 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 202 IPR035513 -
Pvu1g2248 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Pvu1g2248 572 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2248 Pvu-Chr1 48031828 48033546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2248 5 565 Carbohydrate Esterase AT3G05610 41.021 4.56e-137 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2248 K01051 - gmx:100815015 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2248 1 48031828 48033546 Pvu7g2164 7 44890351 44892633 PCT
Pvu7g2163 7 44885309 44887479 Pvu1g2248 1 48031828 48033546 PCT