Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2243 ATGAGTTGTTTTAGCTGTTGCGAAGAAGATGACTTCCAGAAGCATGCTGAAAGTGGAGGACAACATCTTGTAAAAAACTCAACAGGAAATGATGGAAATGGTCGTGCATCTGAAACTGCAAAGCAGGGCATTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTACAAGTAGATGAACTCAAAGAAATTACTGATGGTTTTGGAGAAAGTTCTTTGATTGGAGAAGGATCCTATGGAAGAGTGTATTACGGTGTTCTGAAAAGTGAGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCCGATGACGAGTTTTTAGCCCAGGTTTCCATGGTTTCACGGCTGAAACATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGAATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTGCACGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACTCAAAGAGTTAAAATTGCCGTAGGGGCAGCCAAAGGACTCGAGTATTTGCATGAGAGGGCTGATCCTCACATTATCCATCGGGACATCAAGTCAAGCAATGTACTCATCTTTGACGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGACTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGTCAATTGAATGCTAAGAGTGATGTATACAGCTTCGGTGTCGTTCTTCTGGAACTTTTAACGGGAAGGAAGCCTGTTGATCATACACTACCACGTGGACAACAGAGCCTGGTTACTTGGGCTACTCCAAGACTCAGTGAGGATAAAGTTAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCTCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGTGTACAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTCCAACCTTTGTTGAATGCAAGACATGGACCTGCTGGTGAAACTTCAAACTAA 1086 0.43 MSCFSCCEEDDFQKHAESGGQHLVKNSTGNDGNGRASETAKQGIQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSEQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETSN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2243 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2243 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Pvu1g2243 361 CDD STKc_IRAK 75 348 - -
Pvu1g2243 361 Gene3D Transferase(Phosphotransferase) domain 1 144 356 - -
Pvu1g2243 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Pvu1g2243 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Pvu1g2243 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Pvu1g2243 361 MobiDBLite consensus disorder prediction 20 40 - -
Pvu1g2243 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2243 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Pvu1g2243 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Pvu1g2243 361 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Pvu1g2243 361 MobiDBLite consensus disorder prediction 17 40 - -
Pvu1g2243 361 PIRSF ILK 12 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2243 Pvu-Chr1 48000920 48004285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2243 48 352 Receptor kinase-like Gene Family AT3G58690 49.032 5.85e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Pvu1g2243 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2243 K13436 - gmx:100499642 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2243 1 48000920 48004285 Pvu7g2165 7 44895601 44899247 PCT