LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g2238	ATGGATGACTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTACGGACCCTGTTTGCACCGGGAGGTCTGCTCCACGTGCGTCGCTCGCCTCCGTTTCATATGCGACGATCGCCGCTGCTGCATCTGCAAGACCGAATGCAACCTCGTATTCGTCACCAAGGCTCTGGGAGATTATACGAAGGTGATTAATGACTTTGCTGCCCTTCCTTCAGAGGTAAGGGAGGGCAAGATTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAATGTATGTGACAAGATGGAGGAGCAACCACAGGATGCTGCTTCAAGGCGACGTGCTAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACTGTCACAAGTTGCATATGTGCGGTTTGTGTTTGGAGGGCAGAAAGGTTTTTATATGTGAGCAAAAGCTATATACCAGAACACAGTTGAATCAACACATAAACACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGGCATCCAATGTGTGAATTCTGCAGAACCCCATTTTATGGAGACAATGAATTATATATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATTCACTTCCGTCAAGAGCATTTCTTATGTGAAGATGAGGCTTGTCTTGCTAAGAAATTTGTTGTTTTTCAATCTGATCAAGAGATGAAGAGGCATAATGCTATCGAACATGGAGGACGGATGTCACGATCTAAGCGTAATGCTGCTCTTCAGATTCCAACTAGTTTTCGATACAGACACGGTAATGAACATGAGCAACGCCGTGGAAGAAATCGTTCGTTTCGTCGTGATTTTACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTCTACAAACAGCTAATACAGAGCAAACATTTCGTGATCAATCGGCATCAGGTAGTGGGCGAGTTGCTGTTGATGATGACAATGGTGATATTGATTCTCTCATTCTGCCATTTGAATCATTAGATGCAGCTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCCTTGGGGCATAGCTCAAGGAGTGGACCTCTGGAGGATTCTTCCTTTCCACCACTACCCATAACTTCCAACAATGGCCAGCAAGGATCCAAACATGAATTGGAAGGTTCATCTAGTAACTCCATGGCTGCACGTCTGCGTCGTCGTAACAACAAAACTGTAACCGTTATTAATTCTGGTAATGCCTGGCCAGCAGCTAGTCGTGGACTGGTACAACCATCAAGTAATTCTTCGCAATTTAGACTGTCATCAAATAATGTCCCGGGTCTTTCTCGTAATTCTGGGCAGACAAAGAAGACAGTGATTAACAGTGGACTTTTGCCATCAACTTATGCTGGTTCTATTCAGTCTACACAAAGAACTGCTCATGGACAGTTACCTGGTGGTTCATCGAGGGATACACGTGACAATGTTAGAATTGTTCACTCTGCATCTGCCCCAAATCTCATGGAAAACAACTCTGTCGAAGCTTCAATATCTGATTTTCCTCCTGTTTCTGCTGCACAGGCGAGCAAGTTACCTGCTAGCAGTCACTCTTCATTGAATGTGGAAAATGTTCAGTCTGCTAACAAGTCTCTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGACGAAGGAAGATACAGTATGTTTAAGGACATATCTGCCAAATATCGCCAAGGCACAATAGATACAGGCACGTATCTGGACTATGTGCAGAAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATATTGAGAAGCAGACAGAGCTTGTTGAGGCATACAGCGCTACTTTGCAAAGAGATGCTTTACTTGAAAATAACTTGGTTCAAAGCAGTGCTAGCACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGTAAAGGTAAGTCTATAGATAGTAGGGGGAGTAACTCCACAGAGAAATTAGCAGATAACTTTTTAAGCACCGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAGGCGGAGGTGCTATCAAGGGGTGATTACCGAAGTGACAGGGGCAAATTAAAAATCGATCAGCGGATTGATACAAATTCTGGAAGTCAACCTGCGGTGAAGCTTAGTGGGAAGACTGAGACATCAAATGGCAGTTTATCCACTCAAATTAGAGAGGATGGTGGTGGTGGGAACAAGCAACGCAAGAAAGGTTCAAAGTTCCTTAGAGTGCGACTTGGTGATGGCCCTGCTTCGGCCCTTGATCAATCAGATCCTGGAACAACAGACGGCTCAGAAGTTAACAAGGATGGATCTGGAGGAGGTCTACCTGTGCGTGGTGTTTGGCGAAATGGGGGAGGTCAGAAACTTTTTCCCTAA	2505	0.4411	MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTKVINDFAALPSEVREGKIGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCNVCDKMEEQPQDAASRRRAKFRNIGQLKGHLFHCHKLHMCGLCLEGRKVFICEQKLYTRTQLNQHINTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSDQEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRNRSFRRDFTENQLSMAIEASLQTANTEQTFRDQSASGSGRVAVDDDNGDIDSLILPFESLDAAGSEASSRYLQALGHSSRSGPLEDSSFPPLPITSNNGQQGSKHELEGSSSNSMAARLRRRNNKTVTVINSGNAWPAASRGLVQPSSNSSQFRLSSNNVPGLSRNSGQTKKTVINSGLLPSTYAGSIQSTQRTAHGQLPGGSSRDTRDNVRIVHSASAPNLMENNSVEASISDFPPVSAAQASKLPASSHSSLNVENVQSANKSLVEKIRGALDFDEGRYSMFKDISAKYRQGTIDTGTYLDYVQKFGLSHLVLELARLCPDIEKQTELVEAYSATLQRDALLENNLVQSSASTHRKDSNVNKKGKGKSIDSRGSNSTEKLADNFLSTVHQLQANYKSSEEKAEVLSRGDYRSDRGKLKIDQRIDTNSGSQPAVKLSGKTETSNGSLSTQIREDGGGGNKQRKKGSKFLRVRLGDGPASALDQSDPGTTDGSEVNKDGSGGGLPVRGVWRNGGGQKLFP*	835

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	452	484	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	455	484	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	738	770	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	504	519	-	-
	Pvu1g2238	834	CDD	RING-HC_ZNF598	5	46	IPR041888	-
	Pvu1g2238	834	ProSiteProfiles	Zinc finger RING-type profile.	5	46	IPR001841	-
	Pvu1g2238	834	SMART	c2h2final6	221	251	IPR013087	-
	Pvu1g2238	834	SMART	c2h2final6	252	281	IPR013087	-
	Pvu1g2238	834	SMART	c2h2final6	108	145	IPR013087	-
	Pvu1g2238	834	SMART	c2h2final6	197	220	IPR013087	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	391	433	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	504	524	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	338	359	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	716	737	-	-
	Pvu1g2238	834	PANTHER	EBR1	1	832	-	-
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	711	834	-	-
	Pvu1g2238	834	PANTHER	ZINC FINGER PROTEIN 598	1	832	IPR044288	GO:0061630\|GO:0072344
	Pvu1g2238	834	MobiDBLite	consensus disorder prediction	663	692	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g2238	1	829	C2H2 Transcription Factor Family	AT3G62240	51.448	0.0	822

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g2238	K22381		-	gmx:100799878	1462.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g2238	1	47961955	47966565	Pvu1g2238	1	47961955	47966565	ECH