Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2226 ATGGATGTTAACATGAAGAAATCACGGTCCACAGAAGAGGTGCAGAATAGTGAGGACACTAGAAAAGGTCCATGGAGCGTTGAAGAGGACACTCTTCTCCAAAACTACGTTGCCACCCACGGCGACGGTCGCTGGAACTCCGTCGCACGCTGTGCAGGCCTCAAGAGATCGGGCAAAAGTTGCAGGCTAAGATGGTTAAACTACTTGTGCCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGATCTTCATTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGATTAAGCAAGCAAGAAATCTGAAGTGTGACGTGGACAGTAAACAGTTCAAAGATGCCTTGCGTTACGTGTGGATGCCCCGTTTGATTGAGCGAATTCAACCGTCATCGGAAACTCACGACCCGCTCCATGTGTCATCCCCTTCCAAACTTTACCCGAACCCAACTCCTCTGCTCCATCACCAAAACGGGTTGCACGGTTCGTGTTCAGGTTCCAGTAATGGCTTGGACTCATCAAGTGCCAAGTTGGAGAGTCCTTTAGAGTGTGAAGGTTTGGGCCATAATGTTTCAGTTTCGGGCGTATGTGAGCGAGAGTTGGAACAGGGGAATATCACGCTACCTTTAGGTGGTGGGGACTCAATGGAGAGTTTGTGGGATGATCAGAATCTGTGGCTTATGCATCAACTTTGTGATGATCTGGAAATTCAAGACAATTTCCTTGCGTGA 804 0.4826 MDVNMKKSRSTEEVQNSEDTRKGPWSVEEDTLLQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLCPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSKQFKDALRYVWMPRLIERIQPSSETHDPLHVSSPSKLYPNPTPLLHHQNGLHGSCSGSSNGLDSSSAKLESPLECEGLGHNVSVSGVCERELEQGNITLPLGGGDSMESLWDDQNLWLMHQLCDDLEIQDNFLA* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2226 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 252 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu1g2226 267 Gene3D - 79 120 - -
Pvu1g2226 267 CDD SANT 24 69 IPR001005 -
Pvu1g2226 267 Gene3D - 23 74 - -
Pvu1g2226 267 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Pvu1g2226 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Pvu1g2226 267 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Pvu1g2226 267 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Pvu1g2226 267 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Pvu1g2226 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 6 252 - -
Pvu1g2226 267 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Pvu1g2226 267 MobiDBLite consensus disorder prediction 1 24 - -
Pvu1g2226 267 SMART sant 21 71 IPR001005 -
Pvu1g2226 267 SMART sant 74 122 IPR001005 -
Pvu1g2226 267 MobiDBLite consensus disorder prediction 181 200 - -
Pvu1g2226 267 CDD SANT 79 118 IPR001005 -
Pvu1g2226 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2226 Pvu-Chr1 47850920 47852335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2226 19 258 MYB Transcription Factor Family AT2G47190 48.047 3.10e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2226 Myb_DNA-binding 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2226 K09422 - gmx:100797220 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2226 1 47850920 47852335 Pvu7g2178 7 45045204 45046968 PCT