Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2225 ATGGAGAGGAGTTTATCAGAAAATGGGTCCTCGGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCAGTTCTCTCCGATTACATCACACTCCACGGAGAAGGTCACTGGAACTCTGTTGCTCGCTACACAGGTCTAAAACGAACGGGCAAAGGCTGCAGACTACGATGGTTGAACTACTTGCGTCCTAACGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCATGATTCTCGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTGCCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGATGTGAACAGCAAACAATTCAGAGACACGCTGCGTTTTGTGTGGATGCCACGCATGCTTGAGCGGATTCAGGCTCAGGCTTCGTCATCAGGCCAAGCCCAAACCACCTTAACCTCCAAGGTTCAAGCCCAAAGCGACCCTTGCGGAGGAGCCACCGCCACCGCCAGTAACCCGGGTTTGCTGTCAGAGGCTTCATCGGCGGTGGATGTCCACGAGGCGTCTCTCTCTGATTCCGGCGCGTCGTACAGTTTAATGGGTTGTGGAAGTTGGTCATCATATGGTGCAGAAGAAGGTTATGGCGGTGTTGACTTGTGGACGGACGAGAATATTTGGTTCTTGCAACAGCAGCTCGCTGATGATTTCTGA 762 0.5092 MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSVLSDYITLHGEGHWNSVARYTGLKRTGKGCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTTLTSKVQAQSDPCGGATATASNPGLLSEASSAVDVHEASLSDSGASYSLMGCGSWSSYGAEEGYGGVDLWTDENIWFLQQQLADDF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2225 253 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pvu1g2225 253 CDD SANT 82 121 IPR001005 -
Pvu1g2225 253 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pvu1g2225 253 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g2225 253 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pvu1g2225 253 CDD SANT 27 72 IPR001005 -
Pvu1g2225 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Pvu1g2225 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 187 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu1g2225 253 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Pvu1g2225 253 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pvu1g2225 253 Gene3D - 24 77 - -
Pvu1g2225 253 Gene3D - 82 123 - -
Pvu1g2225 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Pvu1g2225 253 MobiDBLite consensus disorder prediction 163 187 - -
Pvu1g2225 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 14 187 - -
Pvu1g2225 253 SMART sant 77 125 IPR001005 -
Pvu1g2225 253 SMART sant 24 74 IPR001005 -
Pvu1g2225 253 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2225 Pvu-Chr1 47821425 47822714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2225 1 252 MYB Transcription Factor Family AT2G47190 49.638 1.54e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2225 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2225 K09422 - gmx:100819467 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2225 1 47821425 47822714 Pvu7g2179 7 45070914 45072115 PCT