Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2219 ATGGAGATTCCGAAGGAGCAGATGGAGCAGAGGCTCAATTTCAACGGAGACCCTCCAAACCCTCATTCTCACGACAATGGCAACGGCTTCAACCACTCCCAACCCCTCGATTCTGGATACGCTCTCAACCATCCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCAGATCGAGTGGACAGTCCGAGTAATGTAAAACTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCTGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGCCAAGGAAGTTGTTTTGTGAAATATTCAACATTTGATGATGCTGACAGGGCTATCAAGGCTTTAAACAATCAATATACATTTGTTGGGGAATCATATCCCGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGACTTGGGGTTCGAGGGTTCTCCCGTAACGTGGAAAAGAAAGATCCTTTAGAAGTTGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCTACAAAAAAGGATATTGAAGAAATATTTTCCCCTTATGGATATGTAGAAGATATCTTCATTGCGACCAGTCGTGGATATGCTTTTGTCAAGTTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAACCTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAGGACAGGAGAGTCAAGGAGCAACTTTTCATCTGTGAATGCGAATTTTGGACCCTGTTCTCAAGAACCAGCAGTATGGCCACTACCAAATTTTGGTGATTCCAATTACGGAGGAAATATTTTGCCTATTGCCCCGCATCATTCCTCAATTGCACACCCACAAGTTACTACTCATATGCAAAACTGGGAAGCTGGTGCTGTGGTACAACATGCATTCCCCCCCCAACAATTGCATTCACAGTTGCCTTTCGGGTCAATTCAAGCTCCAAAATTGCCTTCTCAGCCATTTATTACTGAGGGGCAGAGACAATCACATCCCGCAGATTCATCAGTTCAAAATATAGAGCAGCACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCCGAGTATGACTGGAGTGAGCACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGTCTTGGACGAGAAAGAATCTCAGAAGCTTCCGGAGCAGGAAGATAATTGCTGCAGTCTCTCACAATTATCGTCATGTTCCTCTCAACAAGTTGCTGAAAAACAAAAGGAAACAAATCATGACCACAGACAGTCAGATACAAGTCCTGTTGTTGCATAA 1479 0.4429 MEIPKEQMEQRLNFNGDPPNPHSHDNGNGFNHSQPLDSGYALNHPVPRPLRKRPWHHSNQGTSPDRVDSPSNVKLYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYSTFDDADRAIKALNNQYTFVGESYPVVVKFADRELERLGVRGFSRNVEKKDPLEVVADKVFVSCFNKEATKKDIEEIFSPYGYVEDIFIATSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPRTGESRSNFSSVNANFGPCSQEPAVWPLPNFGDSNYGGNILPIAPHHSSIAHPQVTTHMQNWEAGAVVQHAFPPQQLHSQLPFGSIQAPKLPSQPFITEGQRQSHPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEDFPEYDWSEHYCPDGVKYYYNCVTCESRWEKPEEYVLDEKESQKLPEQEDNCCSLSQLSSCSSQQVAEKQKETNHDHRQSDTSPVVA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2219 492 MobiDBLite consensus disorder prediction 1 72 - -
Pvu1g2219 492 Gene3D - 60 159 IPR012677 -
Pvu1g2219 492 SUPERFAMILY RNA-binding domain, RBD 28 152 IPR035979 GO:0003676
Pvu1g2219 492 MobiDBLite consensus disorder prediction 469 492 - -
Pvu1g2219 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Pvu1g2219 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Pvu1g2219 492 ProSitePatterns WW/rsp5/WWP domain signature. 412 437 IPR001202 GO:0005515
Pvu1g2219 492 MobiDBLite consensus disorder prediction 345 400 - -
Pvu1g2219 492 Gene3D - 175 261 IPR012677 -
Pvu1g2219 492 PANTHER RNA BINDING PROTEIN 50 471 - -
Pvu1g2219 492 SMART rrm1_1 180 250 IPR000504 GO:0003723
Pvu1g2219 492 SMART rrm1_1 74 150 IPR000504 GO:0003723
Pvu1g2219 492 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 50 471 - -
Pvu1g2219 492 CDD WW 410 439 IPR001202 GO:0005515
Pvu1g2219 492 Gene3D - 409 451 - -
Pvu1g2219 492 MobiDBLite consensus disorder prediction 13 38 - -
Pvu1g2219 492 Pfam WW domain 411 437 IPR001202 GO:0005515
Pvu1g2219 492 ProSiteProfiles WW/rsp5/WWP domain profile. 412 439 IPR001202 GO:0005515
Pvu1g2219 492 SUPERFAMILY RNA-binding domain, RBD 178 264 IPR035979 GO:0003676
Pvu1g2219 492 SMART ww_5 407 439 IPR001202 GO:0005515
Pvu1g2219 492 MobiDBLite consensus disorder prediction 345 411 - -
Pvu1g2219 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Pvu1g2219 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Pvu1g2219 492 SUPERFAMILY WW domain 411 441 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2219 Pvu-Chr1 47773568 47783654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2219 75 284 Eukaryotic Initiation Factors Gene Family AT4G34110 28.959 7.26e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2219 K13207 - gmx:100776162 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2219 1 47773568 47783654 Pvu1g2219 1 47773568 47783654 ECH