Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2218 ATGGATAATAATAAGGAGACGATGATGATGACGATGATGATGGGTGTGAAGAAGAAGGAGGATCATGCCATAGGGTCTTCGTCCTTCCATTGTAATTATCCATTCCTTGATTTCTCTGAGGAAAAGAGCTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAGAATATAGTCCTCTGCTTGATTTGCCTTTAGGGTCCAACATGGCAGTGCCTCAAACCTCCGATCTTAAGGAACCACCTCAGACTAAGAAAGATTGGTCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCTTGTCCAGTGAGGCTCTCAACGATGAGCAACAGAATAGAACTGTAGACCAAACACATGATGAACACCAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGCAATGTGAAGAAACGCGTGGAGCGATCTTTTACCGACCCAAGCATTGTGGTGACAACCTACGAAGGCCAACACACTCATCCAAGCCCAGTTTTGGGTCGCTCTAACAACTTTGGTTCGCTAATGTCTGGATCTGAGAACTACATGTCCCAGTATTATCAGCAGCACCATCAACAGCAACTCCATGTCGATGCATTGTCTTCTTTGGGTTTCCTCTCTCCAAAGAATGTCACTTTTCCTCAAGAGACTGCGTTGTTGAGTGACTATGGGCGTCTTCAAGATGCTGTTCCTTCACATATGTTTAAACAAGACTAG 882 0.4535 MDNNKETMMMTMMMGVKKKEDHAIGSSSFHCNYPFLDFSEEKSSLGFMELLGVQEYSPLLDLPLGSNMAVPQTSDLKEPPQTKKDWSEVTNQQPATPNSSSISSLSSEALNDEQQNRTVDQTHDEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVLGRSNNFGSLMSGSENYMSQYYQQHHQQQLHVDALSSLGFLSPKNVTFPQETALLSDYGRLQDAVPSHMFKQD* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2218 293 MobiDBLite consensus disorder prediction 70 144 - -
Pvu1g2218 293 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2218 293 SUPERFAMILY WRKY DNA-binding domain 151 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g2218 293 PIRSF WRKY_txn_fact_IIc 1 293 IPR017396 GO:0003700
Pvu1g2218 293 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2218 293 Gene3D WRKY domain 144 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu1g2218 293 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 271 IPR044810 GO:0003700
Pvu1g2218 293 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu1g2218 293 MobiDBLite consensus disorder prediction 117 144 - -
Pvu1g2218 293 Coils Coil 119 143 - -
Pvu1g2218 293 MobiDBLite consensus disorder prediction 85 116 - -
Pvu1g2218 293 PANTHER WRKY TRANSCRIPTION FACTOR 36 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2218 Pvu-Chr1 47770993 47773054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2218 39 293 WRKY Transcription Factor Family AT2G47260 45.981 1.32e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu1g2218 WRKY 1.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2218 - - vra:106757666 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2218 1 47770993 47773054 Pvu1g2218 1 47770993 47773054 ECH
Pvu1g2218 1 47770993 47773054 Pvu7g2190 7 45186238 45188369 PCT