Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2215 ATGTCGAAGAGAAAGTTCGGATTTGAAGGCTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTACGTTCCTCCCTCCTCCCGACACGGCCACGACAACTATGAGGACACTGACCTCGACAACATTGACTACGACGAGAACAACGACGAAGGGATCAAGAACAGCAACGACGACGACGAAATCGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCGCCGCCGCCCGTGCCGAAGGAGAAGGCCGAGGACCGGTATCGGGACGACGACGACGATCCCATGGATAGTTTTCTGAAGGCGAAGAAGGATTTAGGGCTGACTCTCGCGTCTGAGGCGCTGCACGCTGGGTACGATTCGGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTATGATTGAGTATGATTCCGACGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGACCACTCTTCCATTGACTACGAACCCTTCAATAAGGATTTTTACGAGGAGACATCTTCAACATCAGGTATGAGTGAGCAGGATGTTAGCGAATACCGGAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCAATAAAGACTTTTGAGGACTGTGGGTTTCCGTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCGGGCAGGGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAGGGGCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATATCTGGAGGCCAAGAAGTTTGCAAAAGCTTATGGAGTACGCGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGATATGCTGAAAATGAAGGCATTGACAATGATGAGAGCAACTTACCTGGTGCTGGATGAGGCTGATCGAATGTTTGATCTTGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTACTAGAGTAACCGTTGGAGAGGTGGGGATGGCAAATGAAGATATCACTCAAGTTGTTTATGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTGGTTTTTGCTTCAAAAAAGGCTACTGTGGATGAAATTGAATCACAGTTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTGTCTACCATGTGCTCGTTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTCGATATAGCAAAGGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAACGTGTCCGTAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGGGGAGGTGGTCGTGGTGTGCGTGGAGTGGATTTTGGCTTGGGGATTGGATATAATCCTGAGTCATCTAGCACAGTTCCTACTCGATCTGCCGCTGTAAATTCTCTGCGGACAGGAATGATGTCACAATTTAAGAGTAACTTTGTTGCTGCTTCATCAAACTCTGAGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACATATCAGCACACTGCTTCACTTCCTGCTTCGTCAGCAGTAAATACCAGCACTCAAGGTTCTGGGGTAAATCCTGGTCAGAAGAGCACGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2283 0.4674 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDENNDEGIKNSNDDDEIDPLDAFMEGIHEEMRAAPPPVPKEKAEDRYRDDDDDPMDSFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETSSTSGMSEQDVSEYRKSLAIRVSGFDVPKPIKTFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPTRVTVGEVGMANEDITQVVYVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESSSTVPTRSAAVNSLRTGMMSQFKSNFVAASSNSENQGFGNNTSMAANKRPALPGFVSGGSIGGDVNTYQHTASLPASSAVNTSTQGSGVNPGQKSTNSSKPKERRRPSGWDR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2215 760 Gene3D - 428 605 IPR027417 -
Pvu1g2215 760 Gene3D - 183 427 IPR027417 -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 710 745 - -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 707 760 - -
Pvu1g2215 760 Pfam DEAD/DEAH box helicase 245 416 IPR011545 GO:0003676|GO:0005524
Pvu1g2215 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 427 IPR014001 -
Pvu1g2215 760 SMART ultradead3 240 442 IPR014001 -
Pvu1g2215 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 373 381 IPR000629 -
Pvu1g2215 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 596 IPR027417 -
Pvu1g2215 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 452 601 IPR001650 -
Pvu1g2215 760 CDD DEADc_DDX42 232 428 - -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 16 31 - -
Pvu1g2215 760 SMART helicmild6 480 561 IPR001650 -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 608 633 - -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 16 70 - -
Pvu1g2215 760 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 649 - -
Pvu1g2215 760 Pfam Helicase conserved C-terminal domain 456 561 IPR001650 -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 84 104 - -
Pvu1g2215 760 CDD SF2_C_DEAD 439 571 - -
Pvu1g2215 760 MobiDBLite consensus disorder prediction 746 760 - -
Pvu1g2215 760 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 649 - -
Pvu1g2215 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 430 IPR027417 -
Pvu1g2215 760 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2215 Pvu-Chr1 47714911 47719308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2215 221 577 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 1.04e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2215 K12835 - gmx:100814854 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2215 1 47714911 47719308 Pvu1g2215 1 47714911 47719308 ECH