Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu1g2210 | ATGGACACTGATGCTAATGCCTCCCCCCAACCTGAGTCAGAGCCATCTTCAGAGCTCAAATCATCAGAGACTCAAACATCAAAGAAAAGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGATTGGAGAGAATGTTGGCAAGCTCAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAACGCTCATCATCACATACACCTCTGCGCATAACCATCCATGCCCCACCACCACCACCACCACAAATTCACCCCAGCAACCAAAAGAATCCGAATCCGAAACCACCCAAGACCTCTCAGCTACCTCAAAGGAGGAAGATCCAGAACATATAGAAGAAGAGCAAAGGGATAATAATAATAATAAGCCCAGTGATGAAGAAAAATTTCTTTACTTGCAATCTCCAATACGATGCTCCCAAGACATAGAAATGGAACAAGAAGACCCTTTCAAGCTAAACACGGAGAAAAGCCATGAAAGAATAGATCTCCTCTTGGAGGAGGAAGAAGAGCCCCTTTGTTATGCACAAGTCAAGAACTTGTCTGCTTCCAAAAATGAAGAACTTGATTTTTTCGACGAGCTTGAGGAGTTGCCCATGTCTTCATCTTTCTTGCCCTTCACGAGGAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTTTTGA | 786 | 0.4389 | MDTDANASPQPESEPSSELKSSETQTSKKRKMVEKTVVAVRIGENVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASTLIITYTSAHNHPCPTTTTTTNSPQQPKESESETTQDLSATSKEEDPEHIEEEQRDNNNNKPSDEEKFLYLQSPIRCSQDIEMEQEDPFKLNTEKSHERIDLLLEEEEEPLCYAQVKNLSASKNEELDFFDELEELPMSSSFLPFTRSIFSDERIPVAPF* | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu1g2210 | 261 | MobiDBLite | consensus disorder prediction | 139 | 164 | - | - | |
Pvu1g2210 | 261 | MobiDBLite | consensus disorder prediction | 110 | 138 | - | - | |
Pvu1g2210 | 261 | MobiDBLite | consensus disorder prediction | 110 | 170 | - | - | |
Pvu1g2210 | 261 | SUPERFAMILY | WRKY DNA-binding domain | 53 | 116 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu1g2210 | 261 | PANTHER | WRKY TRANSCRIPTION FACTOR 69-RELATED | 19 | 244 | - | - | |
Pvu1g2210 | 261 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Pvu1g2210 | 261 | Gene3D | WRKY domain | 42 | 117 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu1g2210 | 261 | SMART | WRKY_cls | 55 | 115 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu1g2210 | 261 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Pvu1g2210 | 261 | Pfam | WRKY DNA -binding domain | 57 | 114 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu1g2210 | 261 | ProSiteProfiles | WRKY domain profile. | 50 | 116 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pvu1g2210 | 261 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 19 | 244 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu1g2210 | Pvu-Chr1 | 47682848 | 47684741 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu1g2210 | 11 | 124 | WRKY Transcription Factor Family | AT3G58710 | 58.621 | 5.79e-37 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Pvu1g2210 | WRKY | 1.7e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu1g2210 | - | - | gmx:100127368 | 384.415 |