Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2208 ATGGAAATTGACCAATTTTCATCCACAGCTCTAAATTTAAAAGAAATCCTTGTGGGTTATGGCTCTGCACAAGAGGATGTGTTCAAAGGGCAAGAGAGTTTCTCTGGAATGAAATTGCTGGGACCTATTGAGGATGAAAATGGAACCAAATTGTTGAAGGATGAAGATCAGAAACAGCTACAAGAACCCGAAGTTGATGAGTTGTTAGAAGAGTTTAACTGTGGCCATGATATGCAAGAATTCAATGAAACTACAGAGCCAGCGAAACATGACGTAGAATCAGCTGAACACAATAAGCAGGTGCCACCATTATTAGCATCCTTAGAGTTGCTGAGAAACTACGGAAGCAGATTTAAGAGACTAAGCGAGCAAAATATAACGAAACCTTCTTTGGATCCTCACCAGATATCAACTGAAGAAATAATGAGAGTGGCTGGAGCAAGATATGTTCAATATTCTGCACATTGGAATGATAGTTTTTGCATCCCTATGCATCCATACGGTTTGGATTTTGGTGGTTTGTCTGAGGAAGAAAATAGAGAGGTAGAACTTGTTCAGTTTCTCCTTGGTGCAGCTGAGAGGGTAGGTTGCCAACAATTTGAACGTGCAAGCAAGTTACTTCTCCACTGTCAACTGAATTCATCAGCCAATGCAAGCCCTGTTCAGAGAGTCATCTTTCACTTCGCTCAAGCACTTCGAGAGAGAATCGACAGAGGACTGGGAAGGATGACAGCTAAGGGATCAGAGAAAAATGAAGAAGTGGAGTTAATTCAAAAGCTTGACACCAAAGTTGCCCTAACATGCCATAAAAATATTCCTTTCAATCAAGTCATGCAATTCACTGGAATACAAGCTATAGTGGAACATGTTGCATCTGAGACCAAAATTCATCTTATTGATCTTGAAAGTGTAAGTGGGGTGCACGATACAGTTTTGATGCAAGCACTGACTGAACGCCAGGATTACAAAGTGCAACTTTTCAAGATAACTGCACTTGCACTGAGTTCATACAAAGCCATGATAGAAGAGACTGGAAAAAGGTTAGCTAGGTTTGCTGAATCCTTGAACTTACCCTTTTCATATAATGCTGTTTTTGTGACAGACTTTGCAGAGATAAGGAAAGATGATTTTGAAATTGGAGAGGATGAAGTTGTGGCTGTCTACTCTCCATATTTTCTGAGGGGCATGGTATCAAGGCCAGATTGTATGGAAAACTTGATGAGGGTTATATGGAATATCAAACCGGTTATAATGATAGTCCTTGAAGTTGAAGCAAACCATAACTCACCCTTCTTTGTGAACCGCTTCATTGAAGCGTTGTTCTTCTACTCGGCATTTTTTGATTGCCTTGGAAGCTGCATGAATCATGAGAATGAGTGCAGAATGAAAATAGAAGCAGTATTATCTGAGGGGATACGGGACATTGTTGCAATGGAAGGGAGAGAAAGAAAAGTTAGAAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCAAGGTACCGAATGGTGGAAATAGGGTTCAGTGAGTCATCTCTTTACCAAGCTCACTTGGTTAACAAAGAGTTTGCCTTTGGGAAATTCTGCACTGTAGACAAAAATGGCAAGTGTCTTTTAGTTGGATGGAAAGGGACCCCACTTCATTCAATCTCAGCTTGGAGATTTCTTTGA 1668 0.4041 MEIDQFSSTALNLKEILVGYGSAQEDVFKGQESFSGMKLLGPIEDENGTKLLKDEDQKQLQEPEVDELLEEFNCGHDMQEFNETTEPAKHDVESAEHNKQVPPLLASLELLRNYGSRFKRLSEQNITKPSLDPHQISTEEIMRVAGARYVQYSAHWNDSFCIPMHPYGLDFGGLSEEENREVELVQFLLGAAERVGCQQFERASKLLLHCQLNSSANASPVQRVIFHFAQALRERIDRGLGRMTAKGSEKNEEVELIQKLDTKVALTCHKNIPFNQVMQFTGIQAIVEHVASETKIHLIDLESVSGVHDTVLMQALTERQDYKVQLFKITALALSSYKAMIEETGKRLARFAESLNLPFSYNAVFVTDFAEIRKDDFEIGEDEVVAVYSPYFLRGMVSRPDCMENLMRVIWNIKPVIMIVLEVEANHNSPFFVNRFIEALFFYSAFFDCLGSCMNHENECRMKIEAVLSEGIRDIVAMEGRERKVRNVKIDVWRRFFARYRMVEIGFSESSLYQAHLVNKEFAFGKFCTVDKNGKCLLVGWKGTPLHSISAWRFL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2208 555 Pfam GRAS domain family 184 553 IPR005202 -
Pvu1g2208 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 553 IPR005202 -
Pvu1g2208 555 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 53 553 - -
Pvu1g2208 555 ProSiteProfiles GRAS family profile. 175 553 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2208 Pvu-Chr1 47675460 47677497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2208 182 554 GRAS Transcription Factor Family AT1G66350 30.214 5.56e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu1g2208 GRAS 2.9e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2208 - - gmx:100791952 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2208 1 47675460 47677497 Pvu1g2208 1 47675460 47677497 ECH