Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2198 ATGAATTATATGGCAGATGTTGTTTTGCTAGTCGATGATTTGAAACTGCTTTCTGGGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCATAGAAACCTTGGAAGCACCTTGTGCTTGCTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAAAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATTCAGCTCCACCCAAGAAGTCTAAGATAAATGATGAAGCAATGTCCATTAGGGAGGAAGAAGAAGAGTCAAATGCAAGAATAGAGATAACGGTGGAAGGAATTGCAATGGAAAGCGATTACTCGGAATGCAGTTCAGCCGCTGACAGAAGTGCGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTTGTCTTACTCGTAAGACATTTTTTCGCAGTGCTTTCAAATGGAACGGAAGATTACCCATTTACACTGCTTACTGTAATTATATTAAAGACTAGTGGAATCATTATACCTATGTACATAGTTATTAAGATTATTGGAGCCGTTCAGAGCAGTAGTCAGCAGTATCAGGATTCTGATGATGACGACACATCAATGTCTGAAGATGAGATACAACATAATGTAAATTTAAGACATTCATAG 660 0.3894 MNYMADVVLLVDDLKLLSGIPRCRICHEEEFESIETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYSAPPKKSKINDEAMSIREEEEESNARIEITVEGIAMESDYSECSSAADRSASCCRSLAIAFTLVLLVRHFFAVLSNGTEDYPFTLLTVIILKTSGIIIPMYIVIKIIGAVQSSSQQYQDSDDDDTSMSEDEIQHNVNLRHS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2198 219 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 207 - -
Pvu1g2198 219 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Pvu1g2198 219 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Pvu1g2198 219 SMART ringv_2 22 71 IPR011016 GO:0008270
Pvu1g2198 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 80 IPR013083 -
Pvu1g2198 219 Pfam Protein of unknown function (DUF3675) 76 185 IPR022143 -
Pvu1g2198 219 ProSiteProfiles Zinc finger RING-type profile. 23 70 IPR001841 -
Pvu1g2198 219 MobiDBLite consensus disorder prediction 195 219 - -
Pvu1g2198 219 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 207 IPR033275 -
Pvu1g2198 219 CDD RING_CH-C4HC3_MARCH 23 70 - -
Pvu1g2198 219 SUPERFAMILY RING/U-box 21 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2198 Pvu-Chr1 47586725 47588920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2198 23 111 C3H Transcription Factor Family AT2G37950 33.333 2.00e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2198 - - gmx:100802379 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2198 1 47586725 47588920 Pvu1g2198 1 47586725 47588920 ECH
Pvu1g2198 1 47586725 47588920 Pvu7g2208 7 45372627 45375135 PCT