Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2191 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAATGGAGGAGGATGAAATTTTGACCAAGTACATTCAGGCTAATGGAGAAGGTTCTTGGAGGTCATTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGATTAACTATTTAAGAGCTGATCTAAAGAGAGGGGACATTTCTGCTGAGGAAGAAAACACCATTGTGAAGTTGCATACTTCGCTTGGCAACAGGTGGTCGTTGATAGCTAGCCACTTGCCTGGAAGAACCGACAATGAGATTAAAAACTATTGGAACTCTCATTTGAGTCGAAAAATTTACACTTTTCGAGGTTCATCTAATGCTAAAACAGACATCATCACGCTTACCCTACCTCCTAAGAGGAAACGTGGCAGGACCAGTCGCTGGGCCATGAAGAAAAACAAGACATCATGTGTCCTAAAACAAAACCAACCTTTATTACCAGCCGTTCCTCTTCCACCAACACCACCACTTGAGACTGAGAAGCATTCCTCCACCAATGGAAATACTGCTACTCAAGAAGAAGAAAATGGAGGTAATAATGGCATATGGTTAGAAGGTGAGGAAAATATAATAATAGATGAAGATGACATATGGACACCCTATGACAAGGAAGTTATTAATGAGGAAGAGATGTTGCAGTACTTTTGTTCAGACAAGACTTCTGATTATGACTTATGCCAAAGCAAGGTGCCGCTGGATCATAAGGATGAGTCTGTGTCATGGGAACAGTACCAGAGCCTTCTCACTTGGCTTTGCCAAGATGAAGACTGGGAAAAGGATTTTCAGAGCGTTGGTGAGATTGATCATCAGAAACAAAAAGACATGGTTGATTGGTTTCTCTCTTGA 900 0.4222 MGRAPCCEKVGLKKGRWTMEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGDISAEEENTIVKLHTSLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFRGSSNAKTDIITLTLPPKRKRGRTSRWAMKKNKTSCVLKQNQPLLPAVPLPPTPPLETEKHSSTNGNTATQEEENGGNNGIWLEGEENIIIDEDDIWTPYDKEVINEEEMLQYFCSDKTSDYDLCQSKVPLDHKDESVSWEQYQSLLTWLCQDEDWEKDFQSVGEIDHQKQKDMVDWFLS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2191 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu1g2191 299 CDD SANT 16 61 IPR001005 -
Pvu1g2191 299 MobiDBLite consensus disorder prediction 161 200 - -
Pvu1g2191 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu1g2191 299 Gene3D - 71 116 - -
Pvu1g2191 299 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu1g2191 299 CDD SANT 71 112 IPR001005 -
Pvu1g2191 299 PANTHER MYB TRANSCRIPTION FACTOR 2 292 - -
Pvu1g2191 299 SMART sant 13 63 IPR001005 -
Pvu1g2191 299 SMART sant 66 114 IPR001005 -
Pvu1g2191 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu1g2191 299 MobiDBLite consensus disorder prediction 176 196 - -
Pvu1g2191 299 Gene3D - 11 67 - -
Pvu1g2191 299 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 292 - -
Pvu1g2191 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu1g2191 299 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pvu1g2191 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2191 Pvu-Chr1 47516892 47521298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2191 1 296 MYB Transcription Factor Family AT5G49330 43.769 4.02e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g2191 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2191 K09422 - gmx:100788260 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2191 1 47516892 47521298 Pvu7g2219 7 45475635 45479668 PCT