Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2188 ATGTCTGATAATCACAAGACTAAGAGTTCGGCACCCAAACTGTTTGGTTTCCCACTAACAGAGCTAGAGGAATTTGCAGAAAGAAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAAGCGAGTTTTCGCAAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGTCAGAGAGCAAGGCGATTCCAAATCCACCACCACAGACGCTCCTCCGTGCCACCATCATCTGCTTCAGTTCCGCCTCTTACCTTTCTCACCTCGCATGCAATAATACGATCAGTGCCACTTTCAGTTACACTGCCACCCATCTGCCTTCCCTCTCCTTCTACTTCTACCACCGCAAAGCACTTCTCCTCGCGCCCTATTTTCCTTTCTTCTTCCACTCACCCCACTACTACTATCTCTACTACTTCATGTTTTCCTTTTCAGCTTTATGCCTCACCCGCTGTACTGCAATCTGCATCTACTGTCTTTGATTTTTCTGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 543 0.4751 MSDNHKTKSSAPKLFGFPLTELEEFAERKYDVGEDRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHHHRRSSVPPSSASVPPLTFLTSHAIIRSVPLSVTLPPICLPSPSTSTTAKHFSSRPIFLSSSTHPTTTISTTSCFPFQLYASPAVLQSASTVFDFSADREVDVHLKL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2188 180 PANTHER ZINC FINGER PROTEIN 5 3 180 IPR044299 GO:0010090
Pvu1g2188 180 MobiDBLite consensus disorder prediction 54 85 - -
Pvu1g2188 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Pvu1g2188 180 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Pvu1g2188 180 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 180 - -
Pvu1g2188 180 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Pvu1g2188 180 MobiDBLite consensus disorder prediction 61 76 - -
Pvu1g2188 180 Pfam C2H2-type zinc finger 38 63 - -
Pvu1g2188 180 Gene3D Classic Zinc Finger 24 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2188 Pvu-Chr1 47497627 47498516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2188 7 72 C2H2 Transcription Factor Family AT1G67030 52.055 1.83e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2188 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2188 - - gmx:100806818 196.438