Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2183 ATGGCGACGAGAAATCGAACTGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCCTCCTCCGCATCTGCTTCTTCCACCGGTCCCGTCATTGAAATGGTTTCACTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGAGGACCCATCCACCTCTAGGGATGCGTTTACTGTGGGGTTGCCACCGTCTTGGGTGGATGATTCTGAAGAAATAGCTACGGCTATACAACGTGCTCGGGTTAAAATTTCTGAGTTAACTAAAGCTCATTCGAAGGCCTTGATGCCTTCCTTTGGGGATGACAAAGAGGATCAGCGTCTTATTGAGACACTCACCCAGGAAATTACATCTCTTCTTAGAAAGTCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGCGGATCATCTGAGGATTCTAATGTTAGAAAAAATGTACAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATATTTAAAACGTTTACAACAACAAAAAGAGGGTTATGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACATGATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAAATTGAACAGGTTGTTAAGTCAGTTCATGAACTTGCCCAAATCATGAAGGATCTCTCGGTCCTAGTGATAGACCAGGGAACAATTGTGGACAGAATTGACTACAACATTCAGAGTGTTTCTACGTCCGTTGAAGATGGCCTTGAGCAGTTGCAAAAGGCAGAAAGAACGCAGAAAAAAGGAGGGATGATTATGTGTGCCACGTCGCTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCCTCTAG 963 0.4444 MATRNRTVEFRKHRDAVKSVRAPLSSSASASSTGPVIEMVSLLPSNRSSYAPLSTEDPSTSRDAFTVGLPPSWVDDSEEIATAIQRARVKISELTKAHSKALMPSFGDDKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKRLQQQKEGYDGVDLEMNFNGSKFGSHDDEFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEDGLEQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2183 320 PANTHER SYNTAXIN 1 315 IPR045242 -
Pvu1g2183 320 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pvu1g2183 320 SMART tSNARE_6 219 286 IPR000727 -
Pvu1g2183 320 SUPERFAMILY t-snare proteins 69 279 IPR010989 GO:0016020|GO:0016192
Pvu1g2183 320 SMART SynN_4 64 180 IPR006011 GO:0016020
Pvu1g2183 320 Pfam SNARE domain 260 312 IPR000727 -
Pvu1g2183 320 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 315 - -
Pvu1g2183 320 CDD SNARE_syntaxin16 229 285 - -
Pvu1g2183 320 Gene3D - 70 278 - -
Pvu1g2183 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2183 Pvu-Chr1 47462481 47466921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2183 1 309 SNARE and Associated Proteins AT3G05710 69.136 3.21e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2183 K08489 - gmx:100803629 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2183 1 47462481 47466921 Pvu1g2183 1 47462481 47466921 ECH
Pvu1g2183 1 47462481 47466921 Pvu7g2055 7 43941486 43946392 ECH