Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2180 ATGTCTGCCGACGCCCACCCCGTTAATCATATCAATCCCAAGGGCCTCCTCTGCAATGCCGCCGCCGGTGCTTCCGCCGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTCCCGCAACTCACCAATGGAAGTGTTAAAGGCAGCATAATAGTTGGTAGTTTGGAGCAAATTTTTCGCAAGGAGGGGTTACGTGGAATGTACCGAGGGCTTGCGCCCACTGTGCTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTACATATGAGCAGCTTAAGAGCTTTCTCCATTCTGATGATGACAGCCATCATCTTTCAATTGGATCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTCACAAATCCCCTCTGGGTTGTCAAGACTAGACTCCAAACCCAAGGAATAAGATCTGGTGTTGTGCCATATAGGGGCACACTATCTGCATTAAGGAGAATTGCACATGAAGAGGGCATTCGGGGCCTGTACAGTGGACTTGTACCTGCTTTGGCTGGTATCAGTCATGTTGCCATTCAATTTCCTACATACGAGACAATAAAGTTTTATCTGGCAAATCAAGATGACACAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCAGTTTCCAAAATTTTTGCATCCACATTAACTTATCCTCATGAGGTCGTACGTTCCAGACTGCAAGAACAAGGGCATCATTCAGAGAGACGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAAGAAGGCATATCAGGTTTTTACCGAGGTTGTGCCACCAACCTTCTGAGGACAACGCCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCTCTTTTTCCTTCTGATCCACAACCTCATATTTTGTGA 957 0.4493 MSADAHPVNHINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLTNGSVKGSIIVGSLEQIFRKEGLRGMYRGLAPTVLALLPNWAVYFSTYEQLKSFLHSDDDSHHLSIGSNMIAASGAGAATTMFTNPLWVVKTRLQTQGIRSGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDTAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSERRYSGVIDCIRKVFQQEGISGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQPHIL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2180 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Pvu1g2180 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 304 IPR018108 -
Pvu1g2180 318 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 317 - -
Pvu1g2180 318 Gene3D Mitochondrial carrier domain 113 308 IPR023395 -
Pvu1g2180 318 Gene3D Mitochondrial carrier domain 3 112 IPR023395 -
Pvu1g2180 318 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Pvu1g2180 318 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Pvu1g2180 318 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Pvu1g2180 318 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Pvu1g2180 318 PRINTS Mitochondrial carrier protein signature 225 247 IPR002067 GO:0055085
Pvu1g2180 318 SUPERFAMILY Mitochondrial carrier 15 300 IPR023395 -
Pvu1g2180 318 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 317 IPR044712 GO:0006862|GO:0055085
Pvu1g2180 318 Pfam Mitochondrial carrier protein 116 207 IPR018108 -
Pvu1g2180 318 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Pvu1g2180 318 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Pvu1g2180 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2180 Pvu-Chr1 47432575 47436616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2180 1 312 Chloroplast and Mitochondria Gene Families AT2G47490 75.962 1.29e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2180 K15115 - gmx:100500213 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2180 1 47432575 47436616 Pvu1g2180 1 47432575 47436616 ECH