Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2178 ATGTCAGGCATCGTGGAGTCAAACGATGCCGTTTGCTTCTATTCGGTGCTCGGGATTGACAAACATTCGAGCGATGGTGAAATTCGATGCGCTTATCGTAAGATGGCTCTGAAGTGGCATCCTGATAGATGGACCAAGGACCCAAAGTTTGCACCAGAGGCAAAAAAACAGTTTCAGCACGTTCAAGAGGCTTATTCAGTTTTGTCCAACACAGGGAAGAGAAGGATATATGATGCTGGTTTGTTTGGTCTAATTGGAGAGGACGATGATGAGGGATTTCTTGATTTCATGCAAGAAATGATCTTGATGATGCAGAATGTAAGACCCAAGGATGAGAAAGGGACAATGGAGGATCTGCAGGGATTGTTAAGGGAAATGATGGTGGAAGAAAATGAAGGGACATGGAAGTATGGGTTTAGCTGGAATTCATCTCCATGTCCTACAAGGAGGACACCATGTCCTACAAAGAGGACACGTATTGTATGA 486 0.4424 MSGIVESNDAVCFYSVLGIDKHSSDGEIRCAYRKMALKWHPDRWTKDPKFAPEAKKQFQHVQEAYSVLSNTGKRRIYDAGLFGLIGEDDDEGFLDFMQEMILMMQNVRPKDEKGTMEDLQGLLREMMVEENEGTWKYGFSWNSSPCPTRRTPCPTKRTRIV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2178 161 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 6-LIKE 5 151 - -
Pvu1g2178 161 SUPERFAMILY Chaperone J-domain 8 82 IPR036869 -
Pvu1g2178 161 SMART dnaj_3 11 73 IPR001623 -
Pvu1g2178 161 PANTHER PUTATIVE, EXPRESSED-RELATED 5 151 - -
Pvu1g2178 161 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Pvu1g2178 161 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Pvu1g2178 161 Gene3D DnaJ domain 5 91 IPR036869 -
Pvu1g2178 161 PRINTS DnaJ domain signature 14 32 IPR001623 -
Pvu1g2178 161 PRINTS DnaJ domain signature 32 47 IPR001623 -
Pvu1g2178 161 PRINTS DnaJ domain signature 53 73 IPR001623 -
Pvu1g2178 161 Pfam DnaJ domain 13 78 IPR001623 -
Pvu1g2178 161 CDD DnaJ 12 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2178 Pvu-Chr1 47405316 47407094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2178 12 79 C2H2 Transcription Factor Family AT1G74250 47.826 5.67e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2178 - - pvu:PHAVU_001G210400g 322.783