Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2168 ATGGCAACAACTACCCACCCTATTTATCCACACAATTTCTACCACCCATTGCACACATTCCAGAGATCCACCTGCTTTCACTTCCTCTCTTTTTCTTCTTCTTCTTTTCTCTCTGCCATGTTCAACCCCGTCAGTAGAAAAACCCCACCCATGCTACCTCACATACCCTGCATTTTCTCTGCGGTTCATGTTCTACTCCTTTTTTCAGTAACCCAATTCAGCATCACCGCAGGAGCAACAAGATCCCTCCAACAAAATCACCTCCATTTCCATGTAGCAAACTCAACATGCGAGGGAACACTTTACCCGGACCTCTGCGTCTCAACCCTTACCTCTTTCCCAGATCTCACCTCAAAAACCGTCCCAGAAATGATACGTTCTGTCGTGAACCACACCATATACGAGGTCACATTGTCCTCCTCCAACTGCAGCAGTCTCCGAAAGAAGCTCCCGGGTCTCAACAAACTCGAAAAGCGAGCTCTCGACGACTGCCTCAACCTCTTCGACGAAACCGTGGAGGAGCTCAAAACCACCGTCAAGGATCTCTCCCAGAGCACAATAGGGTCGAAGCGCTACCACGACTCGCAGACTTTCTTAAGCGGCGCCATGACCAACCTCTACACGTGTCTGGATGGCTTTGCATACAGCAAAGGGAACGTGAGAGACAGGATTGAGGAGGGGGTGTTGGAGATTTCGCATCTCGTGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCCGAAAAGAAGAAACAGTCCAAGAACGAGGTTTTCCCCGAATATGGAAAGATGAAAGATGGGTTCCCCTCGTGGGTTTCCCCTAACGACCGGAAGTTGCTTCAAGCTGCTGTGAATGAAACGAAGTTTGACCTCGTTGTGGCCAAAGATGGCAGTGGCAACTTCACCACTATCGGTGCAGCAGTGGCTGCGGCTCCAAACTCCAGCGCCACTAGATTTGTGATACACATAAAAGCTGGGGCATACTTCGAGAACGTGGAGGTAATCAGGAAGAAGAGCAATCTAATGTGGGTGGGAGATGGAATTGGAAAGACTGTTGTGAAGGCTAGCAGGAACGTCGTGGATGGCTGGACCACTTTCCAATCTGCCACTGTCGCTGTGGTCGGAGACGGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCTGGGCCGAGCAAACACCAAGCTGTGGCTCTAAGAAGCGGTGCTGACTTATCAGCCTTCTACCAGTGCAGCTTTGTTGCCTACCAAGACACGCTCTATGTCCACTCTCTGCGTCAATTCTACCGCGAATGCGACGTTTATGGAACCGTCGACTTCATCTTTGGTAATGCAGCAGCGGTGCTCCAGAACTGCAACTTGTACGCACGCAAACCCAATCCAAACCAGAAGAACCTGTTCACCGCACAAGGCAGAGAAGACCCTAACCAAAACACGGGCATTTCCATCATCAACTGCAAGGTTGCAGCAGCTGCGGATTTGATCCCTGTCAAATCTGAGTTCAAGAATTACTTGGGTCGTCCCTGGAAGAAGTATTCCAGGACTGTTTATCTGAATTCTTTGATGGAGGATCTCATAGACCCTGCAGGGTGGTTGGAATGGGATGGCAACTTTGCATTGGATACTTTGTATTATGGAGAGTACAACAATAGAGGTCCCGGTGCAAATACAAGTCGCAGAGTTACGTGGCCTGGTTACAGGGTCATCACCAACTCCACTGAGGCAAGCCAGTTCACTGTTGCAAATTTCATTCAAGGCAATGAATGGTTGACCTCTCTTGGCATTCCATTCTTCTCTGGTTTGAGTTGA 1806 0.4922 MATTTHPIYPHNFYHPLHTFQRSTCFHFLSFSSSSFLSAMFNPVSRKTPPMLPHIPCIFSAVHVLLLFSVTQFSITAGATRSLQQNHLHFHVANSTCEGTLYPDLCVSTLTSFPDLTSKTVPEMIRSVVNHTIYEVTLSSSNCSSLRKKLPGLNKLEKRALDDCLNLFDETVEELKTTVKDLSQSTIGSKRYHDSQTFLSGAMTNLYTCLDGFAYSKGNVRDRIEEGVLEISHLVSNSLAMLKKVPEKKKQSKNEVFPEYGKMKDGFPSWVSPNDRKLLQAAVNETKFDLVVAKDGSGNFTTIGAAVAAAPNSSATRFVIHIKAGAYFENVEVIRKKSNLMWVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADLSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVLQNCNLYARKPNPNQKNLFTAQGREDPNQNTGISIINCKVAAAADLIPVKSEFKNYLGRPWKKYSRTVYLNSLMEDLIDPAGWLEWDGNFALDTLYYGEYNNRGPGANTSRRVTWPGYRVITNSTEASQFTVANFIQGNEWLTSLGIPFFSGLS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2168 601 SMART PMEI_2 88 241 IPR006501 GO:0004857
Pvu1g2168 601 CDD PMEI-like_3 95 246 - -
Pvu1g2168 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 91 246 IPR035513 -
Pvu1g2168 601 Pfam Plant invertase/pectin methylesterase inhibitor 94 241 IPR006501 GO:0004857
Pvu1g2168 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 94 245 IPR035513 -
Pvu1g2168 601 Pfam Pectinesterase 289 586 IPR000070 GO:0030599|GO:0042545
Pvu1g2168 601 PANTHER PECTINESTERASE 63 597 - -
Pvu1g2168 601 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Pvu1g2168 601 PANTHER PECTINESTERASE 63 597 - -
Pvu1g2168 601 Gene3D - 283 600 IPR012334 -
Pvu1g2168 601 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 244 IPR006501 GO:0004857
Pvu1g2168 601 SUPERFAMILY Pectin lyase-like 287 599 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2168 Pvu-Chr1 47298378 47303278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2168 118 600 Carbohydrate Esterase AT4G02300 56.795 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2168 K01051 - gmx:100813592 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2247 7 45735692 45739698 Pvu1g2168 1 47298378 47303278 PCT