Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2167 ATGGCTTTTAAGAACTTGTCCCTTGTTACGCTCTGTGTTTCTCTTGTGTTATCCTTCTTGTCACCCATTTCCATAGCTTCTAACAGTAAACGTGATGTTGTTCCACCAGAAACCATTTGCAAATCCACCATAGATCCTTCCTACTGCAAATCTGTGCTTGCTAATCAAAATGGCACCATCTTTGACTATGGTCGAATTTCTGTCCGAAAATCCTTGTCCCAGTCTCGCAAATTCTTAAACCTAGTAAACTCCTTCCTCAAAGACAGATCCTCTTTGTCTCTTCCCACAATTCGCGCCCTTGAAGACTGTCAATTCCTCGCTGACCAAACCTTTGAATACCTATCAAACGCACTCGACAATGTTGATAAAGCTAGCGGTGATCTTCCCACCACTCAAGCTGAAGACCAGCAAACCATGCTTAGTGCTGCTTTGACAAACCAGGAAACTTGTTTAGATGGCTTACAGACCACAGCTTCTGATCAAAGAGTGAAGAGTGGTCTCTTCTCATCACTCTCGAATGACACGAAGCTTCACAGTGTTTCGCTTGACTTGTTCACCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACTTCATGGCAACCCAATGGGAGACACTTGGGTTTCCGCAACGGTCGTTTACCATTGAAGATGTCTGACCGTGTACGTGGCATCTATGATTCTGCTAGAGGTCACGGCAGAAAACTACTTGATGATAGCAGCGATAGTGTTTTGGTCAATGATATTGTGGTTGTTAGTCAGGATGGAAGCGGGAACTTCACTACCATCAACGATGCTGTAGCAGCTGCGCCAAATAACACAGCTGCTGCCGATGGTTACTTTTTAATTTTTATCACTGCAGGTGTGTATCAAGAGTATGTATCCATAATAAAAAACAAAAGGTACTTGATGATGATTGGAGATGGGATCAATCAAACGATTATCACCGGTGATCACAATGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACCATGGTTCGTAGCTGTTGACATTACATTCCGAAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCACTGAGAAGCGGAGCAGATAATTCCACTTTTTACAGCTGCAGCTTTGAGGGGTATCAGGACACCTTGTACACGCATTCTCTTAGACAGTTTTACCGTGAATGTGACATCTATGGAACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACATGTACCCACGCCTTCCCATGAGTGGCCAATTCAATGCCATCACTGCACAAGGGAGAACAGATCCAAATCAAAACACAGGCACTTCCATTCAGAACTCCACTATAAAAGCTGCTGCTGATTTGGCTCCTGTAGTTGGTACCGTGAAAACATATCTCGGGAGACCATGGAAAGAGTACTCAAGAACAGTCTATATGCAGTCTTTCATGGATAGTTTGATAAATCCTGCTGGGTGGCACGAATGGAGTGGAGATTTTGCCCTAAACACCTCGTACTATGCTGAGTACAACAACACAGGACCAGGTTCAAGCACCGAAAACCGAGTAACATGGTCTGGTTATCATGTTATCAATGCTACTGATGCGGTTAATTTTACCGTGTCTAACTTTTTAGAAGGAGATGACTGGCTTCCTCAAACTGGAGTTCCGTATAGTAGTGGATTGATATAG 1689 0.4369 MAFKNLSLVTLCVSLVLSFLSPISIASNSKRDVVPPETICKSTIDPSYCKSVLANQNGTIFDYGRISVRKSLSQSRKFLNLVNSFLKDRSSLSLPTIRALEDCQFLADQTFEYLSNALDNVDKASGDLPTTQAEDQQTMLSAALTNQETCLDGLQTTASDQRVKSGLFSSLSNDTKLHSVSLDLFTKGWVPEKKISTSWQPNGRHLGFRNGRLPLKMSDRVRGIYDSARGHGRKLLDDSSDSVLVNDIVVVSQDGSGNFTTINDAVAAAPNNTAAADGYFLIFITAGVYQEYVSIIKNKRYLMMIGDGINQTIITGDHNVVDNFTTFNSATFAVVAPWFVAVDITFRNTAGPSKHQAVALRSGADNSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNMYPRLPMSGQFNAITAQGRTDPNQNTGTSIQNSTIKAAADLAPVVGTVKTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALNTSYYAEYNNTGPGSSTENRVTWSGYHVINATDAVNFTVSNFLEGDDWLPQTGVPYSSGLI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2167 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 182 IPR006501 GO:0004857
Pvu1g2167 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Pvu1g2167 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22 560 - -
Pvu1g2167 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Pvu1g2167 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Pvu1g2167 562 Gene3D - 243 561 IPR012334 -
Pvu1g2167 562 PANTHER PECTINESTERASE 22 560 - -
Pvu1g2167 562 SMART PMEI_2 31 184 IPR006501 GO:0004857
Pvu1g2167 562 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Pvu1g2167 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Pvu1g2167 562 SUPERFAMILY Pectin lyase-like 246 560 IPR011050 -
Pvu1g2167 562 CDD PMEI-like_3 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2167 Pvu-Chr1 47289476 47291438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2167 38 562 Carbohydrate Esterase AT1G02810 63.702 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2167 K01051 - gmx:100813051 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2167 1 47289476 47291438 Pvu7g2247 7 45735692 45739698 PCT