Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2166 ATGGCTATGGCTTTTAACAGCTTGTACGCTCGCACACTCAGTGTTTTCCTTCTGCTATCATTCTTCACGTCCATTTCCATAGCTGATAATGGCCATGCAGTTGTTCCACCAGAAACCGTATGCCACTCAACCTTGGACCCTTCTTACTGCAAATTTATTCTTGCTAGTCAAAATGGTAGCATATATGACTATTGCCACATTTCTGTTCGAAAATCCCTGTCCCAGTCTCGTAAGTTCTTGAACACCATGTACTCCTATCTTCAAAACCCCTCCTCTCTCTCCCAACCCACAATCCTGGCTCTTGAAGATTGCCAATTACTTTCTGAACTAAACTTCGAATACTTATCAACGACTCTTGACACTGTCGATAAAGCTAACGTTGTTCTTCCCACCTCTCAAGCAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCAGCAAACTTGTTTAGATGGCCTTCAAACCTCAGCTTCTGATCCAAGAGTGAAGAATGGTCTTTCTTCCCAACTCTCGGATGATATGAAGCTTAATAGTGTCTCACTTTATTTGTTCACCAAGGCTTGGGTTCCTGAGAACAAAATATGGCAGCACCATGGAGCCATCCAGAATGATGGTTTACCCTTGAAGATGCCAAACAAAGTTCGTGCCATTTATGATTCTGCTAAAGGTCAGGGGAGAAAACTACTTCAGACATCGGATGACACAGAAAGCGTTGTGGTGAGTGATATTGTGGTGGTTAGTAAGGATGGAAGTGGAAACTTTACCACCATAAACGATGCCATAGCTGCTGCACCAAATAACACAGCTGTTACGGATGGCTACTTCGTTATCATTATCACCGAGGGTGTATATCAAGAGTATGTATCTATAGCAAAGAACAAGAAGTTCTTGATGTTAATTGGAGATGGCATCAATCGGACAATTGTAACTGGCGATCACAATGTTGTTGATGGCTTTACAACATTCAACTCAGCAACATTTGCTGTGGTAGGACAAGCATTCGTAGCAATGAACATAACATTCCGCAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAACGGAGCAGATATGTCCATCTTCTATAGCTGTAGTTTTGAAGGGTACCAAGACACTTTATACACTCATTCTCTGAGGCAGTTTTATCGAGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGCAGCTGTTGTTTTGCAAAACTGCAACATGTATCCCCGCCTTCCATTGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACTGGCATTTCCATACAAAATGGCACCATAAAAGCAGCACAGGATTTGGCTCCAATGGTTGGTACTGTGGAAACATACCTCGGAAGGCCATGGAAGGAGTATTCAAGAACTGTTTATATACAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAATTTCGCACTGAGCACATTGTACTACGCAGAATATGATAACATGGGTCCTGGTTCAAACACTGGAAACCGAGTAAACTGGTCTGGGTATCATGTTGTCGATGCCACTGAAGCAGCCAATTTTACTGTCTCTAACTTCTTGGACGGCGATGATTGGGTGCCTCGAACTACCATTCCGTACCAGTCATCTTTGTAA 1677 0.4281 MAMAFNSLYARTLSVFLLLSFFTSISIADNGHAVVPPETVCHSTLDPSYCKFILASQNGSIYDYCHISVRKSLSQSRKFLNTMYSYLQNPSSLSQPTILALEDCQLLSELNFEYLSTTLDTVDKANVVLPTSQADDVHTLLSAVLTNQQTCLDGLQTSASDPRVKNGLSSQLSDDMKLNSVSLYLFTKAWVPENKIWQHHGAIQNDGLPLKMPNKVRAIYDSAKGQGRKLLQTSDDTESVVVSDIVVVSKDGSGNFTTINDAIAAAPNNTAVTDGYFVIIITEGVYQEYVSIAKNKKFLMLIGDGINRTIVTGDHNVVDGFTTFNSATFAVVGQAFVAMNITFRNTAGPSKHQAVAVRNGADMSIFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPLSGQFNAITAQGRTDPNQNTGISIQNGTIKAAQDLAPMVGTVETYLGRPWKEYSRTVYIQSFMDSLIAPAGWHEWNGNFALSTLYYAEYDNMGPGSNTGNRVNWSGYHVVDATEAANFTVSNFLDGDDWVPRTTIPYQSSL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2166 558 SMART PMEI_2 32 185 IPR006501 GO:0004857
Pvu1g2166 558 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Pvu1g2166 558 Pfam Plant invertase/pectin methylesterase inhibitor 38 180 IPR006501 GO:0004857
Pvu1g2166 558 SUPERFAMILY Pectin lyase-like 241 555 IPR011050 -
Pvu1g2166 558 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 187 IPR006501 GO:0004857
Pvu1g2166 558 CDD PMEI-like_3 39 190 - -
Pvu1g2166 558 PANTHER PECTINESTERASE 17 557 - -
Pvu1g2166 558 Gene3D - 240 558 IPR012334 -
Pvu1g2166 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Pvu1g2166 558 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Pvu1g2166 558 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17 557 - -
Pvu1g2166 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2166 Pvu-Chr1 47284762 47286638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2166 15 558 Carbohydrate Esterase AT1G02810 56.098 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2166 K01051 - gmx:100792847 948.347