Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2165 ATGGCTTCCAAGCTTTCTTATTCTCTCTCAATCTTTCTCTTTCTCTTACCTTTATTCCACTCAATAATAGTTTCTGCAGACACCGTTTCAAATCCTGCAACTCCTGTTGCTCCTGGAACCGCATGCCAATCCACCCCAGATCCATCCTATTGCAAATCCGTTCTCCCTCCTCAAAAAGGCAACGTTTACGACTATGGCCGCTACTCCGTCAAAAAATCACTATCACAGGCTCGAAAGTTCTTGAGCCTCGTCGATAAATACCTCCTCCGTCGTTCTTCTCTTTCCGCCGCCGCAATCCGTGCGCTTGAAGATTGTCGTACTCTCGGGGAACTCAACTTCGATTTCCTTTCCAGTTCCTTCCAAACCGTTAACAAGACAACGAGGTTTCTCCCTAGTTTTCAAGCCGAAGACATCCAAACCTTACTCAGCGCCATTCTGACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTGAGAAGCGGTCTCACACTCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCACTCGCTCTCTTCACCAAGGGTTGGGTTCCCAGAACCAAAGTCAACACAATGCACCCTACCAAGAAACAACAAGGGTTTCAAAACGGGCGTTTGCCGCTTAAGATGTCAAGCAGAACCCGTGCGATCTACGAGTCTGTGAGTAGGAGGAAGCTCCTTGAGGCCTCGGTGGGTGAGGATGTTGTGGTGAGAGATATTGTGACGGTGAGCCAAGACGGAAGCGGGAACTTCACCACCATCACCGATGCCATTGCTGCAGCTCCTAACAAATCTGCCTCTACCGACGGATACTTCCTTATCTATGTCACTGCTGGTTTGTATGAAGAAAATGTGTCCATTGATAAGAAGAAGACCTACTTGATGATGGTTGGGGATGGTATCAACAAGACAGTTATCACAGGCAATCGCAGTGTCGTTGATGGCTGGACAACCTTCAGCTCCGCAACATTAGTTGTGGTAGGGCAAGGATTCGTGGGTGTGAATATGACCATCCGCAACACCGCCGGAGCCGTGAAGCACCAAGCAGTGGCAGTTCGAAACGGAGCAGACTTGTCCACGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACGTTATACGTTCATTCCCTGAGGCAATTCTACAGGGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCTAAGGTGGTGTTCCAAAGTTGCAACATGTATCCCCGTCTTCCCATGGCGGGTCAATTCAACGCCATCACAGCACAAGGAAGAACAGATCCAAACCAAGACACCGGAATTTCTATCCACAACTGCAGCATTAGAGCAGCTGATGATTTAGCTTCTAGCAGCGGTGTTGCAACATATTTGGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTATATGCAAACCCAGATGGATGATTTGATCAACGGTGCGGGGTGGCGTGCATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTATGGCAACACTGGGCCAGGGTCTAACACCACCAATAGAGTCACGTGGTCTGGTTATCACGTGATTAATGCCACTGATGCAGCTAATTTTACAGTTTCCAATTTTTTGCTTGGTGATGATTGGTTACCTCAGACAGGAGTGTCTTACACCGATAACTTGGTATAG 1686 0.4816 MASKLSYSLSIFLFLLPLFHSIIVSADTVSNPATPVAPGTACQSTPDPSYCKSVLPPQKGNVYDYGRYSVKKSLSQARKFLSLVDKYLLRRSSLSAAAIRALEDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQAEDIQTLLSAILTNQQTCLDGLKDTASAWSVRSGLTLPLSNDTKLYSVSLALFTKGWVPRTKVNTMHPTKKQQGFQNGRLPLKMSSRTRAIYESVSRRKLLEASVGEDVVVRDIVTVSQDGSGNFTTITDAIAAAPNKSASTDGYFLIYVTAGLYEENVSIDKKKTYLMMVGDGINKTVITGNRSVVDGWTTFSSATLVVVGQGFVGVNMTIRNTAGAVKHQAVAVRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMAGQFNAITAQGRTDPNQDTGISIHNCSIRAADDLASSSGVATYLGRPWKEYSRTVYMQTQMDDLINGAGWRAWDGDFALSTLYYAEYGNTGPGSNTTNRVTWSGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTDNLV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2165 561 Gene3D - 243 560 IPR012334 -
Pvu1g2165 561 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 29 559 - -
Pvu1g2165 561 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Pvu1g2165 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Pvu1g2165 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 188 IPR006501 GO:0004857
Pvu1g2165 561 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Pvu1g2165 561 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Pvu1g2165 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Pvu1g2165 561 SMART PMEI_2 33 186 IPR006501 GO:0004857
Pvu1g2165 561 PANTHER PECTINESTERASE 29 559 - -
Pvu1g2165 561 CDD PMEI-like_3 40 191 - -
Pvu1g2165 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2165 Pvu-Chr1 47277941 47280165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2165 9 561 Carbohydrate Esterase AT4G02330 62.326 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2165 K01051 - gmx:100800971 998.038