Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g2163 | ATGGAACACTCTACAAAACTCTTCTGGGTGTTGGTTCTATGCGTAGCTGTAATGGCACACCAGACAACTGCACTGGACATACTAAAAGGAGTAAATCCACCAATCGGCAAGGAAACACTAACAGGAAAGAATCTGATCAACAAGGTATGCACATTGTCCCCAACCAGAGACCTCTGCATTCAGGTCCTCTCTTCCGACCCAGCCAAAAGCCCTAACGCAAACCTCAAAGACTTGACAATCATTTCCCTTCGGTTTGCTGCCACAAACGCTTCAGACATCCTCACCGACGCCAAAAATCTCATTGACGATGACAACCTAGACCCTGATGTCCAACAAGGTTTGGCTGACTGCAAGGAGAACATCTTGGACGCAGAGAGCCAACTGGAGGACACCATCGCTGCCTTGATGGTTGATTCTGAAGCTGATGCACAACTTTGGCTCAAGGCTGCCTTGGCTGCCATCGACACCTGCGATGACTCCATCCCCGGAGACGATGACGTTCTCTCTGTTAAGAGCGCCATCTTCCGCAAGCTCTGCAACATTGCCATCACCGTCAACAAGGTCCTCGTTAATCCAACTATATTGTAA | 588 | 0.4898 | MEHSTKLFWVLVLCVAVMAHQTTALDILKGVNPPIGKETLTGKNLINKVCTLSPTRDLCIQVLSSDPAKSPNANLKDLTIISLRFAATNASDILTDAKNLIDDDNLDPDVQQGLADCKENILDAESQLEDTIAALMVDSEADAQLWLKAALAAIDTCDDSIPGDDDVLSVKSAIFRKLCNIAITVNKVLVNPTIL* | 196 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2163 | 195 | PANTHER | PECTINESTERASE | 1 | 189 | - | - | |
| Pvu1g2163 | 195 | SMART | PMEI_2 | 41 | 185 | IPR006501 | GO:0004857 | |
| Pvu1g2163 | 195 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 25 | 189 | IPR006501 | GO:0004857 | |
| Pvu1g2163 | 195 | Coils | Coil | 114 | 134 | - | - | |
| Pvu1g2163 | 195 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR | 1 | 189 | - | - | |
| Pvu1g2163 | 195 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 41 | 190 | IPR035513 | - | |
| Pvu1g2163 | 195 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 43 | 190 | IPR035513 | - | |
| Pvu1g2163 | 195 | Pfam | Plant invertase/pectin methylesterase inhibitor | 44 | 183 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g2163 | Pvu-Chr1 | 47268493 | 47269356 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2163 | 11 | 189 | Carbohydrate Esterase | AT3G49220 | 25.414 | 9.35e-06 | 43.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g2163 | - | - | pvu:PHAVU_001G208600g | 305.834 |