Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g2159 | ATGATTATTAAGCGGAGTATGAAAACTGCAATTCCAAAGCGGAAATCCTTAAAGTCAGAAAAACTAGGGAATTCGGAGATTCAGCAGATGTCGAGATTAAATGGGGTTTGTTCTGCTGAAGGAGTCTCTGGATCCGGAGAAGCGTCCAATTCAAATTCAAATTCAGTGGATTCCAATGGCACAATTAGAGATTTGCCCCAATCAGAAGAAGCGGAAGGGGTTCGTGCCATTCAACTTCAGTCTTCCAGGGGTCGCGCCAAGAAGCTTCCTTGCAGGTTTAACGATTCTGTTCTTTACAACCGGTTAGGGTCTGTAAAGGAGGATAGGAATACTTTACAAGACGTTGCTATCATGGGTAGTGAGCTAGATTCTCCTTGTTTTCCATGTTCTGCTGAGCTAAGAGATTCTGAGTACTCAGTTAAGACTGTTAAAAAGACAGTTAATGGGGGTCGTTCTTTGTTGGTTAAAGAAAAGAGTAATGGTGTACCTGGACTAAGTTCCGATGCTGAATGTGTGAATGGAAGTGGGAAAAGGAAGAGAGATGTTGAATGTGTGAATGAAAATGGGAAAAGGAAGAGAGATGTTTGCAGATTGGAGGATTTTTGCTTGGGTGATATAGTTTGGGCAAAATGCGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCCTTCGAGCTCCCAAATCAGTCATAAGTTGTTGTGTCCCTTCTTCACTTTGTGTTATGTTTTTTGGTTACTCAAAAAATGGGAAGAGAAGGGACTATGCTTGGGTGAAGCAGGGGATGATATTCTCCTTCTGGGAATTCATGGACAGATTCCAGGACCAGATCAAGTTGTACAAAAGTAAAGCAAGTGACTTTCACAAGGCAATGGAGGAGGCAATGTTGGCAGAAGATGGCATTTTGGACTTACACTTGGAAGCTGAGCAAAATATGGTGGGTGCAGATTCCCGGGTTGACCACCGGTTTTCCTATCAAGACCAGAGTACACTGTCTTGTGCTGGCTGTGGTTTGACGTTGCCATGTAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGTCCTGTGCAAAGTTAATAAAATGGAAACAATATTGTGGCATTTGCAAAATGATTTGGCACCATTCAGATGGGGGAAATTGGGTATGTTGTGATGGTTGTAACGTCTGGGTGCATGCTGAGTGTGACAATATTTCCAGTAAACTTTTCAAGGATCTAGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCACATGGGCACAAGTCAAAAAAGATATCAATGGAGAATAGTCAAAAACTTGTATTACTTGAAAATCTTGCGGTGATATGCAATGGCATGAAAGGAATTTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTGGTTCAAGGAAGCATACACTTACTGAATGGGAAAGGCATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAGGCACAACTCAACCGCTAATAAAATGGATCACTGAACACAATGCTTCAGCTGGAGTTCCCCCGCAGTTAGATCAGCAGCAAATTCTCTCCTTTTTGCAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCGTTTGCAGATGGGTGGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGTTATGGGGTAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTTTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTTAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACATGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACTACAACAACGAAGACGCTGATATACTGTGCAACTCACAGGCTCCCAAACCCAGATTCGGGACTAGTTGTGCATACACCCATGGAGGTATTCTCACCGTCAATTTCGCTTCATAATCACCCGAGGTGCTTCAGGGGATCAAGTCTGGCTTCCACAAAAAATATAGAACTTCTTGAACCTTCAAACTCAGAAATTCATGAGATTGATCCACTATCTGCTGCCCGCACTCGGGTGTACGAAAGGTCTTCCAATAAGAAGACTGTTGCGCCTACAATTCACTTGCTTGGGGGGCCAAAGATTCACTCTTTAACTGAAGTAACTCTATTGAATGGCATTAAGGATGCTCAATCTCGTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAACCAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTATTTGTTCAAGATTAGTGATGAAGTGATGATTGATGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGGTGAGGAGAATCGGATTGTGCTTATTGCGAAGACCATTGTTACAGCTGGTGAAGAACTAACGTATAATTACTTGTTTGATGTAGATGAACCGGATGAACTGAAGGTGCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG | 2970 | 0.4209 | MIIKRSMKTAIPKRKSLKSEKLGNSEIQQMSRLNGVCSAEGVSGSGEASNSNSNSVDSNGTIRDLPQSEEAEGVRAIQLQSSRGRAKKLPCRFNDSVLYNRLGSVKEDRNTLQDVAIMGSELDSPCFPCSAELRDSEYSVKTVKKTVNGGRSLLVKEKSNGVPGLSSDAECVNGSGKRKRDVECVNENGKRKRDVCRLEDFCLGDIVWAKCGKTHPAWPAVVIDPFLRAPKSVISCCVPSSLCVMFFGYSKNGKRRDYAWVKQGMIFSFWEFMDRFQDQIKLYKSKASDFHKAMEEAMLAEDGILDLHLEAEQNMVGADSRVDHRFSYQDQSTLSCAGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLIKWKQYCGICKMIWHHSDGGNWVCCDGCNVWVHAECDNISSKLFKDLENMDYYCPDCKGKFNCKLSTSHGHKSKKISMENSQKLVLLENLAVICNGMKGIYIPKLHLVMCNCGLCGSRKHTLTEWERHAGCKAKKWKHSVKVEGTTQPLIKWITEHNASAGVPPQLDQQQILSFLQEKYEPVYAKWTTERCAVCRWVEDWEYNKIIICNRCQMAVHQECYGVKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCATHRLPNPDSGLVVHTPMEVFSPSISLHNHPRCFRGSSLASTKNIELLEPSNSEIHEIDPLSAARTRVYERSSNKKTVAPTIHLLGGPKIHSLTEVTLLNGIKDAQSREFSSLKERLHHLRKTENQRVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSGEENRIVLIAKTIVTAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN* | 990 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2159 | 989 | ProSitePatterns | Zinc finger PHD-type signature. | 559 | 604 | IPR019786 | - | |
| Pvu1g2159 | 989 | SMART | set_7 | 847 | 970 | IPR001214 | GO:0005515 | |
| Pvu1g2159 | 989 | Gene3D | - | 195 | 305 | - | - | |
| Pvu1g2159 | 989 | MobiDBLite | consensus disorder prediction | 38 | 65 | - | - | |
| Pvu1g2159 | 989 | Gene3D | - | 452 | 529 | IPR010919 | - | |
| Pvu1g2159 | 989 | Gene3D | SET domain | 826 | 989 | IPR046341 | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 610 | 725 | IPR034732 | - | |
| Pvu1g2159 | 989 | CDD | PHD_ATX3_4_5_like | 558 | 604 | IPR042011 | - | |
| Pvu1g2159 | 989 | CDD | SET_SETD1-like | 836 | 985 | - | - | |
| Pvu1g2159 | 989 | PANTHER | PHD FINGER PROTEINS | 1 | 989 | - | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | Zinc finger PHD-type profile. | 372 | 428 | IPR019787 | - | |
| Pvu1g2159 | 989 | SUPERFAMILY | Tudor/PWWP/MBT | 200 | 302 | - | - | |
| Pvu1g2159 | 989 | MobiDBLite | consensus disorder prediction | 38 | 74 | - | - | |
| Pvu1g2159 | 989 | SUPERFAMILY | FYVE/PHD zinc finger | 371 | 433 | IPR011011 | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | SET domain profile. | 847 | 964 | IPR001214 | GO:0005515 | |
| Pvu1g2159 | 989 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Pvu1g2159 | 989 | CDD | PHD_TCF19_like | 375 | 425 | - | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | Post-SET domain profile. | 973 | 989 | IPR003616 | - | |
| Pvu1g2159 | 989 | Pfam | PHD-zinc-finger like domain | 612 | 724 | - | - | |
| Pvu1g2159 | 989 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 553 | 607 | IPR013083 | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | Zinc finger PHD-type profile. | 556 | 607 | IPR019787 | - | |
| Pvu1g2159 | 989 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 369 | 431 | IPR013083 | - | |
| Pvu1g2159 | 989 | Pfam | PHD-finger | 571 | 605 | - | - | |
| Pvu1g2159 | 989 | SUPERFAMILY | FYVE/PHD zinc finger | 557 | 621 | IPR011011 | - | |
| Pvu1g2159 | 989 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 1 | 989 | - | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 7 | 989 | IPR025780 | - | |
| Pvu1g2159 | 989 | ProSiteProfiles | PWWP domain profile. | 203 | 272 | IPR000313 | - | |
| Pvu1g2159 | 989 | Pfam | PWWP domain | 204 | 300 | IPR000313 | - | |
| Pvu1g2159 | 989 | Pfam | SET domain | 858 | 963 | IPR001214 | GO:0005515 | |
| Pvu1g2159 | 989 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 608 | 726 | IPR013083 | - | |
| Pvu1g2159 | 989 | SUPERFAMILY | SET domain | 845 | 985 | IPR046341 | - | |
| Pvu1g2159 | 989 | SMART | PostSET_3 | 973 | 989 | IPR003616 | - | |
| Pvu1g2159 | 989 | Pfam | PHD-finger | 374 | 427 | IPR019787 | - | |
| Pvu1g2159 | 989 | SMART | PHD_3 | 558 | 605 | IPR001965 | - | |
| Pvu1g2159 | 989 | SMART | PHD_3 | 374 | 426 | IPR001965 | - | |
| Pvu1g2159 | 989 | SMART | PHD_3 | 669 | 725 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g2159 | Pvu-Chr1 | 47241650 | 47250316 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2159 | 559 | 724 | C2H2 Transcription Factor Family | AT3G14740 | 34.857 | 1.07e-21 | 95.9 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Pvu1g2159 | zf-HC5HC2H_2 | 8.5e-29 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g2159 | - | - | gmx:100785063 | 1457.97 |