Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2158 ATGTATGATCATATCTCTTTGGATTTCTCTTTCTTGAGATACTCGAAGAAACAGTCAACCAGATCACATGGAAAAATTGGAAATAATTATATATACGCAGTAGTGGCAGATATCGATTTGATCCAAACAGAACATAAAGATCGCTCCTTACACACGCACTGTTTCAACATCAAAGTGTTCACTCTTCTTCTCTTTCAACAATCTAAGTCTTCACTCTTCTTCTCAATCATGGGTATGGAGCCAGACATTGAATCCAAGTACGCTCATAACGGCAAGGTTATGGTGGGCACTGCCATTCTCCTATTCGTTCTCACAATCCTCATCATTATGTTCAACACCTACGTCCGCTTCTGCCGCCGTCGCCGCCGCGCTCTCTTGTCTCATTCCCTTCCGACCACTTCCTCCGCCGAGCCCTGTCTCGATCCTTCCGTCATCAAGTCCCTCCCCACTTTTTCCTTCTCCGCCGCCGTCCACCGCTCTCTCCAGGACTGCGCCGTCTGCCTGTCGGAGTTCGCCGACGGCGATAAAGTCCGCGCGCTCCCAAACTGTAACCACGGTTTCCACGCCGACTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCAGCCACGGCTTGCTCTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGACGAGGGTTGCTCTTCGTCTTTGGGTCCCCTAATTGCGTGTCCGAGAAAGACTTTGGATATAGTGATTGAGGTGGCTGATGTGGAAAGAGGGTTGGATCCTGTAACCGAAGATGACGGATTCAGATGCTCATTCAAGAGGTTTTGTAATGCTTAA 840 0.506 MYDHISLDFSFLRYSKKQSTRSHGKIGNNYIYAVVADIDLIQTEHKDRSLHTHCFNIKVFTLLLFQQSKSSLFFSIMGMEPDIESKYAHNGKVMVGTAILLFVLTILIIMFNTYVRFCRRRRRALLSHSLPTTSSAEPCLDPSVIKSLPTFSFSAAVHRSLQDCAVCLSEFADGDKVRALPNCNHGFHADCIDAWFASHSTCPLCRTPVQPATACSDAEPGSVPVSEADEGCSSSLGPLIACPRKTLDIVIEVADVERGLDPVTEDDGFRCSFKRFCNA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2158 279 SMART ring_2 164 205 IPR001841 -
Pvu1g2158 279 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Pvu1g2158 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 84 228 - -
Pvu1g2158 279 PANTHER RING-H2 FINGER PROTEIN ATL64 84 228 - -
Pvu1g2158 279 Pfam Ring finger domain 163 206 IPR001841 -
Pvu1g2158 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 214 IPR013083 -
Pvu1g2158 279 CDD RING-H2_PA-TM-RING 163 206 - -
Pvu1g2158 279 SUPERFAMILY RING/U-box 144 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2158 Pvu-Chr1 47235116 47236342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2158 87 210 Rapid Response to Elicitors AT3G16720 42.958 1.87e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2158 - - pvu:PHAVU_001G208400g 553.518