Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g2144 | ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCCTTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGGGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGGCACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGGCGCTCCGAATATCGTGTTCTAGTTACTGGATTGCCCTCTTCAGCATCCTGGCAAGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAAGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCCATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGAGAATATGATTCAAGGCGAGATTCCTCTAGAAGTCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGTAGCCGTAGTTACAGTCGGGACAGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAAATCTCCTGCTCCTGTACGTTCTCGTTCAAAATCAAGGTCCCGTTCGTTGTCAGGATCACGGTCCAGGTCCAGATCTCCATTGCCCGCTCGTAATAAAAGTCCCAAAAGGCGCAGTGCTAGCAGGAGTCCGAGTAGGAGCAGAAGCAGGAGCAAGAGTTTGTCTCGGTGA | 900 | 0.4867 | MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSKSPAPVRSRSKSRSRSLSGSRSRSRSPLPARNKSPKRRSASRSPSRSRSRSKSLSR* | 300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2144 | 299 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 3 | 289 | - | - | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
| Pvu1g2144 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 3 | 289 | - | - | |
| Pvu1g2144 | 299 | Gene3D | - | 111 | 188 | IPR012677 | - | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 215 | 229 | - | - | |
| Pvu1g2144 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 273 | 288 | - | - | |
| Pvu1g2144 | 299 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
| Pvu1g2144 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 175 | IPR035979 | GO:0003676 | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 73 | 108 | - | - | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 230 | 272 | - | - | |
| Pvu1g2144 | 299 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
| Pvu1g2144 | 299 | Gene3D | - | 2 | 110 | IPR012677 | - | |
| Pvu1g2144 | 299 | MobiDBLite | consensus disorder prediction | 186 | 299 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g2144 | Pvu-Chr1 | 47112437 | 47117614 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2144 | 2 | 195 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.631 | 3.45e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g2144 | K12890 | - | gmx:100789847 | 362.844 |