Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2141 ATGAAGTTCTGCAAAAAGTACCAGGAATACGTACAGGCCCAGGAGAAGAAGCTTCCAGGCGTAGAATTCAAGACGCACAAGAAGATCTTGAAGAAGTGCAGGAAAAGCCCTTCATCCCAGAAACCCCTTAATGCGTCCCTTGCCGCCAAAACCAGCCCGGACAACTGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATGTGGTGGGGTGTTTTAATCAGCGTGCGCAGAAATTGTTGGATCTACATCTTGCTTCTGGCTTCAGAAAGTACTTTTTTTGGATCAAAGGCAGATTGCACGGAAACCATACTGCCCTGGTTCAAGAAGGCAAAGATCTTGTCACGTACGCACTCATAAATGCCATGGCAATTCGAAAGATACTCAAGAAATATGATAAGATTCATTATTCCAAGCAAGGACAATTATTCAAGTCGCAGGTCCAGAGCATGCATAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCGAGGAAGGAACATACTTTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAACCGTCACTTTCTTGTGAGCTCTTTGATTCTATCAAATTGGATGCTGACTTGACTTGTTCTATATGCTTGGACACACTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATTCTAAAAAGAAATGTCCTCTATGCCGCGAGGGTGGTGTATATGAAGGTGCCGTGCACTTGGAAGAACTAAATATTCTGTTAGGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTCAGACCGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACATTGGGATTCACAGTGTAGGGCATTCGTAGGGGTCTAA 975 0.4462 MKFCKKYQEYVQAQEKKLPGVEFKTHKKILKKCRKSPSSQKPLNASLAAKTSPDNCPVCDGTFFPSLLNEMSDVVGCFNQRAQKLLDLHLASGFRKYFFWIKGRLHGNHTALVQEGKDLVTYALINAMAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKEHTLFDGCSLTIKDGKPSLSCELFDSIKLDADLTCSICLDTLFDPVSLTCGHIFCYICACSAASVSIVNGLKSADSKKKCPLCREGGVYEGAVHLEELNILLGRSCQEYWEQRLQTERVERIKQIKEHWDSQCRAFVGV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2141 324 SUPERFAMILY RING/U-box 212 271 - -
Pvu1g2141 324 CDD SPX_BAH1-like 2 147 - -
Pvu1g2141 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Pvu1g2141 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Pvu1g2141 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
Pvu1g2141 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Pvu1g2141 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Pvu1g2141 324 SMART ring_2 220 268 IPR001841 -
Pvu1g2141 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Pvu1g2141 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2141 Pvu-Chr1 47087911 47094231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2141 216 269 C3H Transcription Factor Family AT4G28270 37.288 3.41e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2141 K16275 - gmx:100787904 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2141 1 47087911 47094231 Pvu1g2141 1 47087911 47094231 ECH
Pvu7g1478 7 35560971 35568442 Pvu1g2141 1 47087911 47094231 PCT