Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2140 ATGTCCCTCGCATCTTCAACCCTCTCCTGTGCATTCCCTGTGAAACAAACCTCAGGGGAAACCTTTATCTCAACTATGCTTCAGTGGATAAGATACATTTTCCTCACACCTTGTCCTCAAAGAGCTATATTGTCTTTTGTTGATGTCGTGCTCCTCGTGTTTCTCTTCGTGTTTGCTGCCACCAAGCTCTGGAAAAGGTCCACCTTCAATGGTGGCTCCACTACCGACCTCAGCAAACCATTAATCGGAAACGTCATATCCGTTTTCCATACAACTATGCGGTTTAAGTTAACCATAACTGGAGTGGTTCTTTTGACTGTGCTCTACACTGTTGCTTCTGTTCTTACGTTTAGCAGTCCCACCATGGCGCCGTGGAAGCAAGTTGACGAGGTGTTTTGGTTAGTCCAGGCCATAACACATGCTGTGCTTGTAGTCTTCATCATCCACGAGAAAAGGTTTCAAGTCGTTGCACACCCTCTGTCAGTTCGAGTTTATTGGATTGTAAATTTCTTTGTCATTTTGTTGTTCATTGTTTCTGCTGTCGTACGTTTGGTCTCGGTGGACGTGGATGAGGTCGAAGGCGTCAGGGTGGATGAGGTGGTCTCTTTCATTTCGTTTCCTCTGTCGTTATTTCTTCTTTTTGTGGCGGTTGAAGGATCCACTGGCATTGTTTTGACGACAGAAGAAACACGACCACTTGTGGAAGGAAAAGCCAAGTTGCATGATGGTACTGAGAGAAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTCTATTATCCAAGACTTTTTGGATTTGGATGAACCCCTTATTGAGTAAAGGGTACAAGTCCGTGCTGAAGATTGATGATGTTCCAACGCTTTCTCCGGAGCATAGAGCTGAGAGAATGTCTTCTATTTTTGAATCAAAATGGCCTACATCAAACGAGACATCAAAGCATCCGGTAGGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTGGTCTTCAGCGCCTTCCTAGCTATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGGTTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGGGAAACTCTAAATATGAAGGATACTACCTCGTGTTGATCCTTCTCGTTGCTAAGTTCATCGAAGTCATGAGCACTCATCATTTCAACTTCCAAGCTCAAAAGCTTGGGATGCTTATACGCTGCACTCTTATCTCCTCTTTGTATAAGAAGGGGTTAAAGCTATCATTCTCTTCTCGGAAGGAACATGGAGTTGGGACAATTGTAAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTCCAGTTACATGCTGTGTGGATGATGCCACTCCAAGTTGGTATTGGCTTGGTTCTGCTTTACAAATGTTTAGGTGACTCAGTTGTCATCGCGTTTCTTGGTCTGGTTTGTGCTTTTGCCTATTCTGTAAAGGGAAACAAAAGAAACAACAAGTTCCTTCAAAATCTGATGGTGAACCGGGACTCCAGAATGAAAGCTGTGAATGAGATGCTTAACTATATGTCTGTGATCAAATTTCAGGCCTGGGAGGAACATTTCAAGCAGAGAATTTTGGGTTTCCGTGAGACGGAGTATGGGTGGCTCTCCAAGTTGATGTTCTCAATTTGTGGCAATATTGTTGTGCTGTGGAGCACGCCCTTGTGGATATCAGCTATCACGTTTGGAACGGCTATTTTGTTGGGAGTTAAACTTGATGCAGCCACAGTGTTCACCACAACAACTGTGTTCAGGTTATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAATGATATCACTGGAGAGGTTAGATAGGTTCATGTTGAGCGGGGAATTGTCGAATGATTCAGTTGAGAGAGAGGAAGGATGCGGTGAACAAACAGCTGTGGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAGCACGCAGCAGGACTTGAAAAATATCAATTTGAAAATAAAAAAAGGTGAGCTTACAGCAATTGTTGGAACCGTAGGGTCAGGAAAGTCATCCCTTCTTATATCAATTCTTGGAGAGACGCACAAGATTTCTGGAAAGGTTCGCGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAAAATGAGACCATTGAAGAAAACATTCTCTTCGGTTTACCAATGGACAGACAGAGGTACGATGAGGTTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTACGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTAAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCCGGGCTGTGTATCAAGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCTGAAATATTTAAGGAATGCGTGAGGGGGGCTCTAAAAGGCAAGACCACTGTTCTTGTAACACACCAAGTAGATTTCCTGCATAATGTGGATCGTATATTAGTGACGAGGGACGGTACGATAGTCCAATCAGGGAAGTATGAAGATCTGTTAGAGTCTGGAATGGATTTTAAAGCTCTCGTCGATGCGCATGAGACCTCCATGGAATTGGTAGAGCAGAGTATGATCACGCCAGGTGAAAATTTGAACAAACCAACCAAGGCTCTAGAGATAGCTTCAATTGACAAGGGAAACAATGGTGAAAACAATTGTATTGATGAGCCTAAGTCTAGCAAGAAAAGTTCTAAACTCGTCCAAGAAGAGGAAAGAGAAACTGGCAAAGTGAGCTTACGTATGTATAAACTCTATTGCACTGAGGCGTTTGGCTGGTGGGGCATTACAATAGTATTGATTCTGTCTTTGCTGTGGCAAGTGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTGCTAAAATGTTTAACCCTTCTCTGTTCATATACGTCTATGCAATTATTGCTGTTGTCTCCAGTGTCTTGTTAGTGGGAAGATCCTACTTCGTTACTCTCATGGGGATAAGGACAGCACAACTACTCTTCACACAAATTGTTCGTAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACTACGCCATCTGGGAGAATTCTAAGTAGGGCATCCACTGATCAAACCAATGTTGATGTCCTTCTCCCCTTGTTCATGGGAGTTGTTATCACCATGTACATTACAGTGCTCAGCATCTTCATTATAACCTGTCAAAATTCTTGGCCAACAGTGTTTTTGATAATTCCTCTTGTTTGGTTGAATTTATGGTACCGGGATTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATTACCAAAGCACCAGTTATTCAATACTTCTCCGAAACCATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGTGTTGAAAATCTCAAACGGGTGAATTCTAATTTGCGAATAGATTTCCACAACTATAGTTCTAATGAGTGGTTGGGATTTCGCATAGAATTGTTTGGAAGCATTGTCTTTTGCATTTCTGCCTTGTTCATGATCATCTTGCCCAACGGTATCATAAAGCCAGAAAATATTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAACGCTGTCTTGTTCTGGGCTGTATACATCAGTTGTTTCATCGAAAACAAGATGGTGTCAGTAGAGAGGATAAAGCAGTTTACAAATATTCCATCAGAACCAGCATGGAATATCAAGGATCATCTACCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAGATATCAAGGATTTGCAGGTCAGATATCGTCCAAATTCTCCTCTGGTGCTCAAAGGAATTACTTTAAGCATTAGTGGAGGTGAAAAAGTTGGCGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTTGGTCGGAAAAATAATAGTTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTCAGATCACGGTTCGGTATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACTGTCAGAAACAACATTGACCCCATTGGACAATATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGCCAGCTAAAAGATGTTGTTGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGGCAAAGACAGTTGGTTTGTCTAGGGCGTGTTATACTTAAGAGAAGCCGACTTTTGTTTATGGATGAGGCCACAGCTTCTGTTGATTCTCAAACTGATGGCGTGATTCAGAAGATCATAAGAGAGGAATTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGACAGAGTGCTAGTTGTAGACGCAGGACGAGCAAAAGAATATGACAAGCCTTCCAATTTGCTTCAGAGAGAATCTCTCTTTGGGGCATTAGTTCAAGAATATGCCAACCGATCCAGTGGATTATAA 4524 0.4268 MSLASSTLSCAFPVKQTSGETFISTMLQWIRYIFLTPCPQRAILSFVDVVLLVFLFVFAATKLWKRSTFNGGSTTDLSKPLIGNVISVFHTTMRFKLTITGVVLLTVLYTVASVLTFSSPTMAPWKQVDEVFWLVQAITHAVLVVFIIHEKRFQVVAHPLSVRVYWIVNFFVILLFIVSAVVRLVSVDVDEVEGVRVDEVVSFISFPLSLFLLFVAVEGSTGIVLTTEETRPLVEGKAKLHDGTERKSEVTGFASASLLSKTFWIWMNPLLSKGYKSVLKIDDVPTLSPEHRAERMSSIFESKWPTSNETSKHPVGMTLLRCFWKELVFSAFLAIIRLCVMFVGPVLIQSFVDFTSGKGNSKYEGYYLVLILLVAKFIEVMSTHHFNFQAQKLGMLIRCTLISSLYKKGLKLSFSSRKEHGVGTIVNYMAVDTQQLSDMMLQLHAVWMMPLQVGIGLVLLYKCLGDSVVIAFLGLVCAFAYSVKGNKRNNKFLQNLMVNRDSRMKAVNEMLNYMSVIKFQAWEEHFKQRILGFRETEYGWLSKLMFSICGNIVVLWSTPLWISAITFGTAILLGVKLDAATVFTTTTVFRLLQEPIRTFPQSMISLSQAMISLERLDRFMLSGELSNDSVEREEGCGEQTAVEIIDGTFSWDDDSTQQDLKNINLKIKKGELTAIVGTVGSGKSSLLISILGETHKISGKVRVCGSVAYVAQTSWIQNETIEENILFGLPMDRQRYDEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTVLVTHQVDFLHNVDRILVTRDGTIVQSGKYEDLLESGMDFKALVDAHETSMELVEQSMITPGENLNKPTKALEIASIDKGNNGENNCIDEPKSSKKSSKLVQEEERETGKVSLRMYKLYCTEAFGWWGITIVLILSLLWQVSLMASDYWLAYETSEERAKMFNPSLFIYVYAIIAVVSSVLLVGRSYFVTLMGIRTAQLLFTQIVRSILHAPMSFFDTTPSGRILSRASTDQTNVDVLLPLFMGVVITMYITVLSIFIITCQNSWPTVFLIIPLVWLNLWYRDYYLASSREFTRMDSITKAPVIQYFSETIAGVMTIRSFRKQKIFCVENLKRVNSNLRIDFHNYSSNEWLGFRIELFGSIVFCISALFMIILPNGIIKPENIGLSLSYGLSLNAVLFWAVYISCFIENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPGQGNVDIKDLQVRYRPNSPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPLVGKIIVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRNNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSLVVENGENWSVGQRQLVCLGRVILKRSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEYDKPSNLLQRESLFGALVQEYANRSSGL* 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2140 1507 CDD ABCC_MRP_domain1 642 842 - -
Pvu1g2140 1507 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Pvu1g2140 1507 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Pvu1g2140 1507 Gene3D - 1249 1498 IPR027417 -
Pvu1g2140 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1228 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2140 1507 Gene3D ABC transporter type 1, transmembrane domain 309 619 IPR036640 GO:0005524|GO:0016021
Pvu1g2140 1507 Gene3D ABC transporter type 1, transmembrane domain 910 1246 IPR036640 GO:0005524|GO:0016021
Pvu1g2140 1507 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2140 1507 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Pvu1g2140 1507 Pfam ABC transporter 1282 1430 IPR003439 GO:0005524
Pvu1g2140 1507 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1506 - -
Pvu1g2140 1507 SMART AAA_5 1291 1475 IPR003593 -
Pvu1g2140 1507 SMART AAA_5 669 842 IPR003593 -
Pvu1g2140 1507 MobiDBLite consensus disorder prediction 908 922 - -
Pvu1g2140 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Pvu1g2140 1507 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1265 1499 IPR003439 GO:0005524
Pvu1g2140 1507 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 87 1506 - -
Pvu1g2140 1507 CDD ABCC_MRP_domain2 1263 1483 - -
Pvu1g2140 1507 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2140 1507 Pfam ABC transporter transmembrane region 949 1203 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2140 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1498 IPR027417 -
Pvu1g2140 1507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 864 IPR027417 -
Pvu1g2140 1507 Gene3D - 620 882 IPR027417 -
Pvu1g2140 1507 CDD ABC_6TM_ABCC_D2 948 1240 IPR044726 GO:0140359
Pvu1g2140 1507 Coils Coil 1497 1507 - -
Pvu1g2140 1507 MobiDBLite consensus disorder prediction 901 922 - -
Pvu1g2140 1507 SUPERFAMILY ABC transporter transmembrane region 319 620 IPR036640 GO:0005524|GO:0016021
Pvu1g2140 1507 SUPERFAMILY ABC transporter transmembrane region 945 1245 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2140 Pvu-Chr1 47079669 47086166 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2140 1263 1505 Calmodulin-binding Proteins AT2G36910 30.400 4.21e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2140 - K05666 gmx:100808752 2396.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1481 7 35607812 35616598 Pvu1g2140 1 47079669 47086166 PCT