Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2139 ATGACTTTGCTACGGTGCTTTTGGAAGGAGTTGGTCTTCAGTGTCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGGTTCTGATACAAAGTTTTGTGGATTTCACATCAGGGAAGAGAAGCTCTGAATATGAAGGATACTACCTCGTGTTGATTCTTCTCGTTGCTAAGTTCATTGAAGTTGTGAGTACTCATCATTTCAACTTCCAATCTCAGAAGATTGGGACGCTTATACGGAGCACTCTTATCCCCGCTTTGTATGAGAAGGGGTTAAAGCTATCATTCTCTGCTCGGCAGGATCATGGGATAGGGACCATTGTGAATTACATGGCTGTTGATACCCAGCAACTCTCTGACATGATGCTTCAGTTACATGCTGTGTGGATGATGCCACTTCAGGTTGCCATTGGCTTGTTTCTACTTTACAATTGTCTTGGTGTCTCAGTGATCACCGCTTTTCTCGGTCTTCTTGGTGTTTTTGTGCTTGCTGTGATTAATACCCGTAGGAACAACCGCTTCCAATATAATGTGATGAAGAACCGTGACTCGAGAATGAAAGCTGTTAATGAGACGCTTAATTACATGCGTGTGATTAAGTTTCAGGCCTGGGAGGAACATTTCGACCAGAGAATTACGGGATTCCGTCAGACTGAGTTTGGATGGCTCTCCAAGTTGATGTTCTCATTATGTGGCAATATGGTTGTGATGTGGAGCGCGCCCTTGTTGATATCAACTCTCACGTTTGGAACGGCTATTTTGTTGGGAGCTCAACTTGATGCTGCTACGGTCTTCACAACAACAACTGTGTTCAAGATATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTCTCACAAGCATTGATATCATTGGACAGACTAGATACGTTCATGTTGAGCAGGGAATTGTTGGATGATTCAATTGAGAGAGAGGAAGGATGTGGTGGACAAACAGCAGTAGAAATCATAGATGGGACTTTTAGTTGGGATGATGATAACACGCAACAGAACTTGAAAAATATCAATTTCGAGATAAAAAAGGGGAATGTTTCGGCAATTGTTGGAACTGTAGGGTCAGGAAAGTCCTCTCTCCTCGCATCAATTCTTGGAGAGTTGCGTAAGATTTCTGGAAAGGTTCGGGTTTGTGGGAGTGTTGCTTATGTTGCACAAACATCTTGGATTCAAAACGGGACCATTGAAGAAAACATTCTCTTCGGTTTACCGATGGACAGACAGAGGTACGACGAGGTTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAGCGTGGTATCAACCTAAGTGGAGGCCAGAAGCAGCGTATACAACTTGCCCGAGCTGTGTATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGTTCTGAAATATTTAAGGAATGTGTGAGGGGAACTCTAAAAGGCAAGACCACTCTTCTTGTTACGCACCAAGTAGATTTCCTACATAATGTGGATCAAATATTAGTGATGAGGGACGGTACGATAATCCAATCAGGAAAGTACGATGATCTAGTAGATTCTGGACTGGATTTTAAAGCTCTGGTGGTTGCTCATGAGACCTCCATGGAACTGGTAGAGCAGAGTGTGGTCATGCCTGCTGAAAATTTGAACAGGCCAACAAAATCTCCAGGGGTGACTTCTATTCACAAGGGAACCAGTGCTGAAAGCAATTCTCTTGAGCAGGTCGAGTCTAGCAAGAAAAGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACCGGCAAAGTGAGCTTACATATCTATAAACTGTACTGCACTGAGGCTTTTGGGTGGTGGGGCATCACATTGGTATTGGTTCTTTCTTTGTTATGGCAAGGGTCTTTGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCAGAAGAAAGTGGAATGTTTAACCCTTCTCTCTTCATATCCATCTATGCAATTATTACCGCTGTTTCGGTTATCTTGTTGGTGACGAGATATTACCTCTTTACACTCCTGGGGCTAAAGACTGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCGCCTATGTCTTTCTTTGACACTACTCCTTCTGGGAGAATTCTAAGTAGGGCTTCCTCTGATCAGACCAATATTGATGTCCTACTCCCCTTGTTCATGGGAGTTGTTATTGCCATGTACATTACAGTGCTCAGCATCTTGATCGTCACCTCTCAAAATTCATGGCCAACAGTGTTTTTGATATTCCCTCTTATTTTGTTGAATATTTGGTATCGGGGTTACTATCTAGCATCATCTCGTGAATTAACTCGTCTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATTGCTGGGGTCATGACAATTCGTGCATTCAGACAACAGAGGAATTTTTGTAGAGAAAATCGCAAACGGGTAAATGCTAATTTGCGTATGGATTTCCACAACTATAGCTGCAATGTGTGGTTGGGAGTACGCTTAGAGTTGCTTGGAAGCTTTGTCTTTTGCATTTCTGCCTTGTTCATGATCATGTTACCCAGTAGTGTCATAAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGGTTGTCCTTAAATGCGGTCTTGTTCTGGACTGTATACATGAGTTGTTTCATAGAAAACAAGATGGTGTCTGTCGAGAGGATAAAGCAGTTTACAGATATTCCATCGGAACCAGCATGGAATATCAAGGATCATGTACCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAAATATCAAAGACTTGCAGGTCAGATATCGTCCAAATACTCCTCTGGTGCTCAAAGGCATTACTTTAAGCATTAATGGAGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTCTTTAGGCTGGTGGAACCTTCGGTCGGAAAAATAATAATTGATGGTATTGACATATCCATCTTGGGACTTCACGATCTCAGATCACGGTTTGGTATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATAGGACAATATACAGATGAGGAAATATGGAAGAGCTTGGAGCGTTGCCAGCTAAAAGATGTTGTTGCTGCTAAGCCTGAAAAACTTGACTCTTTAGTGGTGGAAAACGGAGAGAACTGGAGTGTGGGGCAAAGACAGTTGGTTTGTCTAGGGCGTGTTATACTTAAGAGAAGCCGACTTTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACTGATGGTGTGATTCAGAAGATCATAAGAGAGGAATTTGCAGCATGCACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGACAGAGTGTTAGTTGTAGACGCAGGACGAGCGAAAGAATTTGATAAACCTTCCAACTTGCTTCAGAGGCAATCTCTCTTTGGGGCATTAGTTAAAGAGTATGCCAACCGATCCACTGAACTATAA 3573 0.4249 MTLLRCFWKELVFSVVLAIIRLCVMFVGPVLIQSFVDFTSGKRSSEYEGYYLVLILLVAKFIEVVSTHHFNFQSQKIGTLIRSTLIPALYEKGLKLSFSARQDHGIGTIVNYMAVDTQQLSDMMLQLHAVWMMPLQVAIGLFLLYNCLGVSVITAFLGLLGVFVLAVINTRRNNRFQYNVMKNRDSRMKAVNETLNYMRVIKFQAWEEHFDQRITGFRQTEFGWLSKLMFSLCGNMVVMWSAPLLISTLTFGTAILLGAQLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALISLDRLDTFMLSRELLDDSIEREEGCGGQTAVEIIDGTFSWDDDNTQQNLKNINFEIKKGNVSAIVGTVGSGKSSLLASILGELRKISGKVRVCGSVAYVAQTSWIQNGTIEENILFGLPMDRQRYDEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGSEIFKECVRGTLKGKTTLLVTHQVDFLHNVDQILVMRDGTIIQSGKYDDLVDSGLDFKALVVAHETSMELVEQSVVMPAENLNRPTKSPGVTSIHKGTSAESNSLEQVESSKKSSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITLVLVLSLLWQGSLMASDYWLAYETSEESGMFNPSLFISIYAIITAVSVILLVTRYYLFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASSDQTNIDVLLPLFMGVVIAMYITVLSILIVTSQNSWPTVFLIFPLILLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRQQRNFCRENRKRVNANLRMDFHNYSCNVWLGVRLELLGSFVFCISALFMIMLPSSVIKPENVGLSLSYGLSLNAVLFWTVYMSCFIENKMVSVERIKQFTDIPSEPAWNIKDHVPPSNWPGQGNVNIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPSVGKIIIDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKDVVAAKPEKLDSLVVENGENWSVGQRQLVCLGRVILKRSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFGALVKEYANRSTEL* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2139 1190 Gene3D - 931 1181 IPR027417 -
Pvu1g2139 1190 SMART AAA_5 974 1158 IPR003593 -
Pvu1g2139 1190 SMART AAA_5 353 526 IPR003593 -
Pvu1g2139 1190 Gene3D - 308 567 IPR027417 -
Pvu1g2139 1190 SUPERFAMILY ABC transporter transmembrane region 629 928 IPR036640 GO:0005524|GO:0016021
Pvu1g2139 1190 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 634 911 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2139 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 546 IPR027417 -
Pvu1g2139 1190 MobiDBLite consensus disorder prediction 567 597 - -
Pvu1g2139 1190 ProSitePatterns ABC transporters family signature. 451 465 IPR017871 GO:0005524
Pvu1g2139 1190 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 12 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2139 1190 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 2 1189 - -
Pvu1g2139 1190 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 326 549 IPR003439 GO:0005524
Pvu1g2139 1190 CDD ABC_6TM_ABCC_D2 632 923 IPR044726 GO:0140359
Pvu1g2139 1190 CDD ABCC_MRP_domain1 326 526 - -
Pvu1g2139 1190 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1189 - -
Pvu1g2139 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 941 1181 IPR027417 -
Pvu1g2139 1190 CDD ABCC_MRP_domain2 946 1166 - -
Pvu1g2139 1190 SUPERFAMILY ABC transporter transmembrane region 3 304 IPR036640 GO:0005524|GO:0016021
Pvu1g2139 1190 Gene3D ABC transporter type 1, transmembrane domain 594 929 IPR036640 GO:0005524|GO:0016021
Pvu1g2139 1190 Gene3D ABC transporter type 1, transmembrane domain 1 307 IPR036640 GO:0005524|GO:0016021
Pvu1g2139 1190 CDD ABC_6TM_ABCC_D1 13 300 IPR044746 GO:0140359
Pvu1g2139 1190 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 948 1182 IPR003439 GO:0005524
Pvu1g2139 1190 Pfam ABC transporter transmembrane region 634 884 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2139 1190 Pfam ABC transporter transmembrane region 12 279 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu1g2139 1190 Pfam ABC transporter 344 477 IPR003439 GO:0005524
Pvu1g2139 1190 Pfam ABC transporter 965 1113 IPR003439 GO:0005524
Pvu1g2139 1190 MobiDBLite consensus disorder prediction 567 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2139 Pvu-Chr1 47071407 47076815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2139 322 542 Calmodulin-binding Proteins AT2G36910 29.958 7.75e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2139 - K05666 gmx:100808752 2068.12