Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2122 ATGAAGGGGAAAAGCCACAAGATTGGAAAGAAGCAGAGTAGGAAGATGAAGGGCGCGTTGTGTAACAGCAACACCAGGCAGTTGCAGCTTCAGCTAGGTCAAGTTTCCCTCATTCCTCTCAACCAACCATCTTCTACCACTTCTTCCTCCGTTTCCTGCTTCCAGAACCCTCTCGATTCCGAACCTCCAAACGCGTCTTCATCGTGCGTTGTGCTCACCGCCGATGCTGTCGCCGACGACAGGGACGGTATTCTCAGCCAGGACTTCTTCTGCACTCCGGATTACATTACTCCGGATAATCAGAATATTTTTAATGGCTTTGACTGCGATACGGATGATACTCCCTGCCCCAAATCGCCTGAGAAGATTACCACTACGAAGAGCAAGAGATGCCGACTAGATGCTATGTCGGTTCAACCTCTCAGCCCCACCTTTTCTAGTGACCACCAGCCAGCTGTGGAATTGGGAAAGGATTCTGTTGCAGAAGAATTTGCTTTGGAGAACACAATAGCAGCTCCTAGACCAAAGGGTCATAATTATGTGTCCCAATCTGCAGTTGCATTGCGTTGCCGGGTTATGCCTCCTCCTTGCTTTAGGAACCCATATTTAAAAGATGTTTCCGAAAAGGAGAGAGATCCTTTTGGAAACCAAAGATTGAAATGTGCAGGTCTCTTCCCTGCAAATAGTGGTGACGGGCTTTCACGCTATCGTGCTGACTTTCATGAAATTGAGCAAATTGGTAGAGGGAACTTTAGTAATGTTTTCAAAGTATTAAAACGAATAGATGGATGCTTGTATGCTGTTAAACAGAGCATCAGACCCTTACTCCTGGAAACAGAAAGGACAAAAGCTTTGATGGAAGTTCAAGCTTTGGCTTCCCTAGGTTTGCATAAGAACATTGTGGGCTACTATTCTTCATGGTTTGAAAATGAACATCTATACATTCAGATGGAGCTATGTGATCATAGTTTATCTATAAGAAAGTTCTCTGCGGCATTTTCAGAAGCACAAGTGTTGGATGCCTTATTTCAGGTTGCCAATGCTCTGCGATTTATTCACGCGAAGGGAATGGCTCATCTAGATGTCAAACCCGATAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCGACTCTTCTTGATAGTAGCCTGCCAATTGAGGAGGGTGACGCACGTTATATGCCCCAGGAAATCCTTAATGAAAATTATGATAATCTTGACAAGGTTGATATCTTCTCCTTGGGAGCTTCTATTTATGAACTAATTCGCAGATTGCCTTTGCCAGAATCAGGGTGTCAATTTTTTAATCTCAAGGAAGGCAAGTTTCCCCTCTTGCCTGGTCATTCGTTGCATCTTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCGGTTAAGCGGCCTTCTGCTAAAGAATTGGTAGAAAACCCAATTTTTTGTAAGAAGATTCAAACAACAACTGCATGTAGTTGA 1488 0.4368 MKGKSHKIGKKQSRKMKGALCNSNTRQLQLQLGQVSLIPLNQPSSTTSSSVSCFQNPLDSEPPNASSSCVVLTADAVADDRDGILSQDFFCTPDYITPDNQNIFNGFDCDTDDTPCPKSPEKITTTKSKRCRLDAMSVQPLSPTFSSDHQPAVELGKDSVAEEFALENTIAAPRPKGHNYVSQSAVALRCRVMPPPCFRNPYLKDVSEKERDPFGNQRLKCAGLFPANSGDGLSRYRADFHEIEQIGRGNFSNVFKVLKRIDGCLYAVKQSIRPLLLETERTKALMEVQALASLGLHKNIVGYYSSWFENEHLYIQMELCDHSLSIRKFSAAFSEAQVLDALFQVANALRFIHAKGMAHLDVKPDNIYVKNGVYKLGDFGCATLLDSSLPIEEGDARYMPQEILNENYDNLDKVDIFSLGASIYELIRRLPLPESGCQFFNLKEGKFPLLPGHSLHLQNLLKVMMDPDPVKRPSAKELVENPIFCKKIQTTTACS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2122 495 Pfam Protein kinase domain 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2122 495 Gene3D Transferase(Phosphotransferase) domain 1 319 489 - -
Pvu1g2122 495 ProSiteProfiles Protein kinase domain profile. 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2122 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Pvu1g2122 495 ProSitePatterns Protein kinases ATP-binding region signature. 246 269 IPR017441 GO:0005524
Pvu1g2122 495 SMART serkin_6 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2122 495 PANTHER BNAA08G27310D PROTEIN 58 398 - -
Pvu1g2122 495 PANTHER BNAA08G27310D PROTEIN 411 486 - -
Pvu1g2122 495 Gene3D Phosphorylase Kinase; domain 1 230 318 - -
Pvu1g2122 495 SUPERFAMILY Protein kinase-like (PK-like) 226 486 IPR011009 -
Pvu1g2122 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 58 398 - -
Pvu1g2122 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 411 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2122 Pvu-Chr1 46982597 46985854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2122 11 484 Core Cell Cycle Gene Families AT1G02970 59.623 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Pvu1g2122 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2122 K06632 - gmx:547742 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2122 1 46982597 46985854 Pvu1g2122 1 46982597 46985854 ECH