Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2120 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGCCAACACCAACAGCCACAAATCCAACTTCATGACACTAGTCCAGGACCATCTGCTGCTTGCAATAGCAATGCTTCCACTAATCAGCAAGCCAAGAAGAAAAGAAACCTTCCTGGAACCCCAGATCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACCAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACTGAGGTGAAGAAACGGGTGTATGTTTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAGGCCCATCAGAAAACTTGTGGCACCAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAACAGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACCTGCAAAGTCAAATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATATGACCCTAAGAACCCACTAAAATCACTCCCCCAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAACCATGCCTCCCTCTTCTTCCAACCTCCAACTAGGTTCCAACACATCATCAAGCTTCAATTACTTGCAAGACAACAAAAGCGCAGGACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTACTGGCACTACTGCTCCTGATCACGTTTCTTCCACTAGGCCACCATATTCTGGTGCCATGCTGCAGCATAACAACTCCTATGAACATTTCTGTCCGCAGCCTGATCTTTCCAACATGGCAGGGGTGAGTGGTGGAGGAGCATTCATCAACCAACTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTAACATAAATGATGTGGGAATGTTCAGCCAAATGCCACTGGGGAGTGACCACAACCCGGGATTGATGAAGAATGTCGAACAAGAAGTTAGTAATTGTTCTAGTTTGATCCACGGAAGAGATGTGGTTGAAGGTAACCCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCAAGAGTCATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAGCTATGGAGGAACACATGTGGGATGTTTGA 1572 0.4574 MSNISGDEGSFSSGNNGEEVHQESQHQQPQIQLHDTSPGPSAACNSNASTNQQAKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKTMPPSSSNLQLGSNTSSSFNYLQDNKSAGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVTGTTAPDHVSSTRPPYSGAMLQHNNSYEHFCPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAGSNINDVGMFSQMPLGSDHNPGLMKNVEQEVSNCSSLIHGRDVVEGNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAMEEHMWDV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2120 523 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Pvu1g2120 523 Gene3D Classic Zinc Finger 62 130 - -
Pvu1g2120 523 SMART c2h2final6 125 155 IPR013087 -
Pvu1g2120 523 SMART c2h2final6 84 106 IPR013087 -
Pvu1g2120 523 SMART c2h2final6 160 180 IPR013087 -
Pvu1g2120 523 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Pvu1g2120 523 MobiDBLite consensus disorder prediction 1 58 - -
Pvu1g2120 523 MobiDBLite consensus disorder prediction 1 69 - -
Pvu1g2120 523 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Pvu1g2120 523 Gene3D Classic Zinc Finger 138 218 - -
Pvu1g2120 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Pvu1g2120 523 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 509 - -
Pvu1g2120 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2120 Pvu-Chr1 46966050 46968343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2120 41 345 IDZ Gene Family AT3G50700 54.407 1.31e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g2120 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2120 - - gmx:100782774 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2120 1 46966050 46968343 Pvu1g2120 1 46966050 46968343 ECH