Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2117 ATGGTGGAAAGAAGAAGAAAGCCTTTGATACTGTGTTCCACCAAACATGTCATCAATTCAACTGCTCCAACCACCAATCTCTTCCACCGTGATTCTTCTCCCTCCTTCTTCCGTTTTCCTGTAGGAATCCTCCGATTCTCCAACCTCACAAATCCCTCTGTCGACCACTCTTCCCTCCTTGCCCTCTCCACCCCTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCACAGGTTCTTGTCAAGAATGTTGACACCAACACACAGAAAATTGCAGTGGCTGTTGCTTTGGATCCACCAGGCACCACGGTTAACACAGAGTCTCCGTCTTCTAGTTCTTCTTCTCATTCTTCTCGAATAATGCTTCTTTTTCCTTCTTGTCATTTCCCTTTTAATGGTTCCGTGCTCGATGATCAAATAGCCTATGTATCGCCTCTTTTAGCTTTCAACCTTAACTTGCACGTGACATGCTTAAAATCCGTTCTTCACCACGGGCAAGAGGTTTTGGCTTCTTATTTCGGACCTCGAGAAAAAAGGGGTGATGAGGATGATGCTAAAAGCACCGTGGATTCTGTCATCGACGTGGAATTGGAACCACTTGCACTGCCTCCAAAATTTGCCTCTCTTCTGAGGGTTTCTTTTGTGAAGATACCACAATGTGGCATCCTTGAATCCATTAGGGCAAGTTCACCTTTTGAGTCAGAAGAGCGGCAAGACATGATCGACTTGTCATTGCAAAAGTACTTTGAAGTCGATAGGTACTTGTCCAAGGGAGATGTTTTTGGGATTAGCATAAGTTGGAATTGCAATTCCCCCATTTGCGTTTCTTGTAACCAAAGATCATTAAATCAAAATGACAACCTTATCTGTTTCAAGGTTGTTGGTATGGAACCATCAGATGAACAGGTTTTTCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCCCTCCCTCCAGATTTGTTAATTGGTGGACCTGAAGGACCTGCGCCTTTGCGAGGGGACACTGTGAACGTCTTGGCTTCGATACTTACACCAACTTTCTGTCCATCAGTGCTTTCTTCCAAGTTTAGGGTGTCTGTTCTGTTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGTTATGTTGCTTCTCGACTTGGCCTGCATGTGGTGGAATATAACTGTCATGATCTTATGGTGTCTGATAGAACATCTGTTGCTCTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGAATCACAATCGCCTGATGGTTCACCACACGATCAAAGAGGAAATGCATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGATCCTGTCAGTGAACAATGTGATAGTAATTCCATGGGGAAATCAAGCATTGAATCTGTCGAGAAGAGTTCTGAAAAGGCAAGTGGGCATCAGGTTCTATTGATTGCTGCTGCTGACAGTTCAGAAGGTCTGCCGACAACTATCAGACGTTGTTTTAGCCACGAAATAACCATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATTACAGTCATTGCAAAGTTTTTCCGAACTCCTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGACATGCGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCGAGAAACAATGCTAAAGTAGACAAAGATGTGTCTGATGATGTAGACAGTTCTTTTAATTCCAAGATGGCGGAGGACACCAGTCACAGTAAAGTTTCACATCAGATTCCTGGTAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAACGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTATTTTCTTCTGGATTACGAAAGCGATCTGGTGTACTATTGTACGGTCCCCCTGGAACTGGCAAAACGTTATTAGCAAAAGCTGTTGCTACAGAATGTTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGTGACATTTTCCAGAAGGCCAGATCGGTACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGCGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCCGAGATTGACGGCTTAAGTGATTCAACACAGCAAAATATATTATCCTATTTTATTCTAACAATTCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCCCTTCTGCGCCCTGGTCGATTTGATAAACTACTCTATGTGGGAGTTAACTCTGATGCATCTTACAGGGAACGGGTGCTGAAAGCTCTTACACGAAAGTTCAAATTGCATGAAGATATCTCACTTTACTCCATTGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCGTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGTAAAGTTTTGAGTGCAAATCCAGAGTCGTCCAACAAAGATAACGAAGCAGATTCTGTTGTTGTTCAATATGATGACTTTGTCCAGGTGTTAGAAGAGCTATCACCTTCCCTCTCGATAGCCGAGCTTAAGAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAGATGA 2814 0.4303 MVERRRKPLILCSTKHVINSTAPTTNLFHRDSSPSFFRFPVGILRFSNLTNPSVDHSSLLALSTPLLKTLSITSGSQVLVKNVDTNTQKIAVAVALDPPGTTVNTESPSSSSSSHSSRIMLLFPSCHFPFNGSVLDDQIAYVSPLLAFNLNLHVTCLKSVLHHGQEVLASYFGPREKRGDEDDAKSTVDSVIDVELEPLALPPKFASLLRVSFVKIPQCGILESIRASSPFESEERQDMIDLSLQKYFEVDRYLSKGDVFGISISWNCNSPICVSCNQRSLNQNDNLICFKVVGMEPSDEQVFRVNNTLTALVLVGSSPSALPPDLLIGGPEGPAPLRGDTVNVLASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVSYVASRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRESQSPDGSPHDQRGNASEVASVIRKFTDPVSEQCDSNSMGKSSIESVEKSSEKASGHQVLLIAAADSSEGLPTTIRRCFSHEITMGPLTEEQRAEMLLQSLQSFSELLSNTDSEALVKEIVGQTSGYMPRDMRALIADAGANLFPRNNAKVDKDVSDDVDSSFNSKMAEDTSHSKVSHQIPGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSVRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQQNILSYFILTILFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDISLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSNKDNEADSVVVQYDDFVQVLEELSPSLSIAELKKYEQLRDQFEGTSR* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2117 937 ProSitePatterns AAA-protein family signature. 794 812 IPR003960 GO:0005524|GO:0016887
Pvu1g2117 937 Pfam ATPase family associated with various cellular activities (AAA) 681 823 IPR003959 GO:0005524|GO:0016887
Pvu1g2117 937 Pfam ATPase family associated with various cellular activities (AAA) 366 518 IPR003959 GO:0005524|GO:0016887
Pvu1g2117 937 Gene3D - 639 926 IPR027417 -
Pvu1g2117 937 CDD AAA 356 426 - -
Pvu1g2117 937 Gene3D - 825 911 - -
Pvu1g2117 937 Gene3D - 345 542 IPR027417 -
Pvu1g2117 937 PANTHER AAA-FAMILY ATPASE 43 933 - -
Pvu1g2117 937 PANTHER PEROXISOME ASSEMBLY FACTOR 2 43 933 - -
Pvu1g2117 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 589 IPR027417 -
Pvu1g2117 937 CDD AAA 675 823 - -
Pvu1g2117 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 931 IPR027417 -
Pvu1g2117 937 SMART AAA_5 362 522 IPR003593 -
Pvu1g2117 937 SMART AAA_5 677 827 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2117 Pvu-Chr1 46929280 46936357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2117 647 891 Calmodulin-binding Proteins AT3G56690 37.805 6.70e-38 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2117 K13339 - gmx:100820183 1557.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g1652 7 38882796 38883410 Pvu1g2117 1 46929280 46936357 PCT