Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2103 ATGACCGCTGAACCGCCCAAACCAGCGCGACCCTGCGACTACTGTGGCCACTCCACGGCGGTTCTCTACTGCAGAGCCGATTCGGCCAAACTCTGTTTCTCCTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGTACGCTGCTCTGCGATGCATGCGATGATTCCCCTGCCACCATACTCTGTTCCACCGACACCTCTGTTCTCTGTCAGAATTGCGACTGGGAGAAGCACAACCCCGCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTCTTATCTGTCGTGGGGTTTGGGGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAGATTGAAGGGCTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTATTGTTACGATTGATGATTTGATTTGTTCTTCTGCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCCCTGCCTAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGATCCTGAACAAAGTGTGCAACCAGGAAACTTGTCCTCGGCTTTTGAACGTGACGTGGAGGCTGATATCATTCCTTATCACGAGTGGCATAGAGAAAGCGTTGAGCCTATGTATCAAGTTGTTCCTCCGGACCCATCATTGAGAACTTATACTGAAGAAATTCTAGTTAAACAATCTACTTATGTTGGGGAAACCCACACCTTTGTCGACAAGGGAGGGAATCTATCCATTTCTCTCAACTCTGAAACCCTACCAACTACTCCCAAAGCTGCTGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGTGCAGAAAGTAGGGTGAGAGTCAAGGGTCGATTTGCCAAGATGGAGCAGGAACACTAA 1059 0.4976 MTAEPPKPARPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGLSDLFVWDAPSIVTIDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDPEQSVQPGNLSSAFERDVEADIIPYHEWHRESVEPMYQVVPPDPSLRTYTEEILVKQSTYVGETHTFVDKGGNLSISLNSETLPTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQEH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2103 352 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Pvu1g2103 352 SMART bboxneu5 7 54 IPR000315 GO:0008270
Pvu1g2103 352 SMART bboxneu5 55 97 IPR000315 GO:0008270
Pvu1g2103 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 350 - -
Pvu1g2103 352 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Pvu1g2103 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 350 - -
Pvu1g2103 352 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Pvu1g2103 352 CDD Bbox1_BBX-like 11 54 - -
Pvu1g2103 352 Pfam CCT motif 306 348 IPR010402 GO:0005515
Pvu1g2103 352 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Pvu1g2103 352 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Pvu1g2103 352 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2103 Pvu-Chr1 46842991 46847282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2103 10 321 C2C2-CO-like Transcription Factor Family AT2G47890 41.304 6.44e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu1g2103 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2103 - - gmx:100817838 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2103 1 46842991 46847282 Pvu1g2103 1 46842991 46847282 ECH
Pvu1g2103 1 46842991 46847282 Pvu7g1707 7 39755224 39758207 PCT