Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2093 ATGAGGAGGAGGAGAGAGATGGAGCCTGAACCCAGAGACGGTCTTCCCCGTAACCGAGGTCCCGGAGATGATTTGTACACTGAACTGTGGCGTGCATGTGCGGGATATTCCGTTCATGTTCCTCGTGTTGGAGAGTTGGTTTTCTACTTCCCTCAAGGCCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGACACATGGAAATTCCTGCGTCTGGTTTGCCTTCTAAGATCTTATGCAGGGTTGTGTATGTTCAGTTACAGGCCGAAATTTACACAGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGGCCAAGCAAAATGATTTTGATTTAGAGAACGAGGACAATCATGTTCCTTTAAGAACTGCAACCTACTCCTTCAGTAAGGTACTCACTCCATCAGACACAAGCACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTCTTGCGAAGGACTTGCGCGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGTGGTTGGAGCACGTTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGTCTGGAGAAGTTCGTGTTGGGATTCGTCGGGCAAATAGACATCCCAGCAATGCATCCCTGTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTTTCCACAGGATCCCTGTTCACTGTCTATTACCACCCTTGGACGAATCCCTTTGAGTTTATTATTCCTCTGGAAAAATATTTGAAGTCAACTGTTCCCGACTATTCAATTGGAGCGAGAGTACAAATGCAGTGTGATGTTGAAGAGTCTCTAAGAAGATATGCAGGTACGATAATTGGTACTGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCGCAGTAGATGCCTTCATGCACCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCATTGGAATCTGCCACGGAGAAGCACTTTCCTGTTCTCCCAAACCCAAAAAGGCCACATCTACTTAACCAGCACCCTTTGCCTGGATTAAGTGTCTTTGGCATGAATGATGCTGGTCAGAGTTCAGCCAGGGCGGCATCTCAGACTCAGAGAACGGATAGGGACTTGCAAGGACAAGATTACAGTGGCCTGAGTACTTCATGGCCATTGCAAAGACCATCATCGAGTGATGTAATCAACCCATCGAAGTTCTCAATCAGTGGCTCACAATTTGGGAAGGAAAATCTGAACCAGCTCCCCTTTCACATGCAAGACATTCTTCATAAATCTCTTGGAAGATCAACGTCATTGGCACATGAAGACTTGTCAATATCAAGTTCAAATTTAGGCTCCATTTGTTCTGACTCCCTGGGATGGCCTCCTTACGAATCTAGAAATGAAAATGATGCTCCATTTGGTCAACTTGGAAGTTGTAGTAGATACAAGCTTTTTGGAGTTAGCTTAATTGACCGCCAACCGGAGCTCCCTTCATCACAACCTTCAAGTCTGCGTTCTACTCCTCCAATGTCTGTTACCTCCGGGAAAACATGTCAGAAGTGTCGCTCTGTCAATCGTAGCTGCACAAAGGTGATTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTTAGCCGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTCGATGTTTGATTTTGGTGGCGGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGTTCTTGCGAGATTATCCATGGCAGGATTTCCAGTGTGTGGTGCAAAAGATGATCATATGTCAGAAGGATGGTATTAACAGTCTCAATCCAAGGTCCTCAGCAGATCCTCCAAGCCTTTAG 2004 0.4611 MRRRREMEPEPRDGLPRNRGPGDDLYTELWRACAGYSVHVPRVGELVFYFPQGHLEQVAAFTQHQQDGHMEIPASGLPSKILCRVVYVQLQAEIYTDEVFAQVTLVPEAKQNDFDLENEDNHVPLRTATYSFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEILAKDLRGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFVSGESGEVRVGIRRANRHPSNASLSSSLISGHSMQLGILASASHAVSTGSLFTVYYHPWTNPFEFIIPLEKYLKSTVPDYSIGARVQMQCDVEESLRRYAGTIIGTEVIDSIRWPGSEWRCLKVQWDAAVDAFMHPERVCPWWIEPLESATEKHFPVLPNPKRPHLLNQHPLPGLSVFGMNDAGQSSARAASQTQRTDRDLQGQDYSGLSTSWPLQRPSSSDVINPSKFSISGSQFGKENLNQLPFHMQDILHKSLGRSTSLAHEDLSISSSNLGSICSDSLGWPPYESRNENDAPFGQLGSCSRYKLFGVSLIDRQPELPSSQPSSLRSTPPMSVTSGKTCQKCRSVNRSCTKVIKLGTALGRAVDLSRFRGYDELIAELDSMFDFGGGLVNGSSGWHVTCIDDDGDMMFLRDYPWQDFQCVVQKMIICQKDGINSLNPRSSADPPSL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2093 667 SUPERFAMILY DNA-binding pseudobarrel domain 127 263 IPR015300 -
Pvu1g2093 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu1g2093 667 SUPERFAMILY CAD & PB1 domains 572 643 - -
Pvu1g2093 667 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Pvu1g2093 667 ProSiteProfiles PB1 domain profile. 568 651 IPR000270 GO:0005515
Pvu1g2093 667 MobiDBLite consensus disorder prediction 401 444 - -
Pvu1g2093 667 MobiDBLite consensus disorder prediction 1 19 - -
Pvu1g2093 667 CDD B3_DNA 131 232 IPR003340 GO:0003677
Pvu1g2093 667 SMART B3_2 132 234 IPR003340 GO:0003677
Pvu1g2093 667 Gene3D - 564 657 - -
Pvu1g2093 667 MobiDBLite consensus disorder prediction 1 21 - -
Pvu1g2093 667 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Pvu1g2093 667 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu1g2093 667 Gene3D - 297 371 - -
Pvu1g2093 667 Gene3D - 130 233 IPR015300 -
Pvu1g2093 667 PANTHER AUXIN RESPONSE FACTOR 15 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2093 Pvu-Chr1 46731492 46738571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2093 18 658 B3 DNA Binding Superfamily AT4G23980 38.117 1.51e-134 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu1g2093 B3 5.9e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2093 - - gmx:100802387 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2093 1 46731492 46738571 Pvu1g2093 1 46731492 46738571 ECH