Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2089 ATGGCCGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCTCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATGTTTCCGAAGTCGAAATATCTGCACTTTTCTCCAACTATGGAAATATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTCCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGCACCACACACTGATTCCCAGCACCCGTCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTATCGCATGCCACCGATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAATTATCATGTGGCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTAACAGGTCCACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGTTCTGTTTCACCTGCTAGTGGAAATAACAACTCTGCTGCATCTTCAGGTGGCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTGATGCTTTTCAACCATTCGGTATAGTCTTGAGTGCTAAAGTTTTTGTGGATAAAGCAACTGGTGCTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4475 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGNIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGPQHPMAYPTGMISPRPMNASPGSVSPASGNNNSAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELADAFQPFGIVLSAKVFVDKATGASKCFGFVSYDSPEAAQSAISMMNGFQLGGKKLKVQLKRDNKQGKPY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2089 431 MobiDBLite consensus disorder prediction 185 211 - -
Pvu1g2089 431 MobiDBLite consensus disorder prediction 309 337 - -
Pvu1g2089 431 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 418 - -
Pvu1g2089 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Pvu1g2089 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pvu1g2089 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pvu1g2089 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pvu1g2089 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Pvu1g2089 431 MobiDBLite consensus disorder prediction 304 341 - -
Pvu1g2089 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Pvu1g2089 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Pvu1g2089 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Pvu1g2089 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pvu1g2089 431 Gene3D - 2 100 IPR012677 -
Pvu1g2089 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pvu1g2089 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pvu1g2089 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pvu1g2089 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pvu1g2089 431 MobiDBLite consensus disorder prediction 193 208 - -
Pvu1g2089 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Pvu1g2089 431 CDD RRM3_CELF1-6 348 420 - -
Pvu1g2089 431 Gene3D - 312 423 IPR012677 -
Pvu1g2089 431 Gene3D - 101 192 IPR012677 -
Pvu1g2089 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pvu1g2089 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Pvu1g2089 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Pvu1g2089 431 PANTHER RNA BINDING PROTEIN 7 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2089 Pvu-Chr1 46709787 46715077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2089 343 427 Eukaryotic Initiation Factors Gene Family AT1G71770 39.773 1.23e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2089 K13207 - gmx:100813239 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2089 1 46709787 46715077 Pvu1g2089 1 46709787 46715077 ECH
Pvu1g2089 1 46709787 46715077 Pvu7g1716 7 39863504 39867874 PCT