Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2074 ATGTCGATATTACCTAGCATGGACATGCCTACCATTGATGTGGACCTTGGACCAGAGAAGTTTGAAGAAGAGAAACAAGGAGGCCCCTTGTTGCATTGTGATCTATGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCTAGTGCTTGTGTTGATAACACAACAGGAGATCTCTTCAAAACTGCAGGTTCAGTAGCTGTTGATTTGAGGAAGGAGATGATAGATTATCTTACCCAAAGAAGTGAATCATTTGTTGCCGAGTCTGTTATATTGGAAGGTGATCCAGATGGTGAAGTATCAGACCATCCTTATGATATCATTTCTAATTTAGTTGATGACTTTGCAAGTTCAAAGAGGAATTTGTTAAGTCGGGTTTCTGGATGGATATTGAGTGAAAAGAGGGAAGATAACATAGAAGATTTTGTTCAAGAGATGGAAGTTAATGGGTTTTGGACACTTGAGAGGAGAGAAAAAATTGCAGAAACTCTATTAAAAAACGTTGACCTTGCAAACTCATATCATTGCAACATGAGTTTTAATTCCGTAGAAGAACTTGCTAATCATATAGATAATTGCAATTTTAGATCTATAATATGTGAAAATGAGGGATGCAATTCTAGATTTTGTGCATCCCATTTGAAGGATCATGATTCAACTTGCCCTTTCAAGATAATTTCATGTGAACAGAAGTGTTCTGCCAACATTATGAGACGTGAGATGGACAGACATTGTATAACTGTTTGTCCAATGAAGGTTGTAAATTGTCCTTTTTATGCTATTGGTTGTCGGTCAGCCGTTTCACAATGTATGATTGAAAAACATCGTTCAGATGATATTGATTCTCATTTGTGGCATTTCCTTAAAGGGATCTACAAAGAAGCATCTGGAGATGATCTTAACAACCGAGTGGAACAAATTATACAGGTTAGTAAACAATAA 957 0.3689 MSILPSMDMPTIDVDLGPEKFEEEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTTGDLFKTAGSVAVDLRKEMIDYLTQRSESFVAESVILEGDPDGEVSDHPYDIISNLVDDFASSKRNLLSRVSGWILSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDLANSYHCNMSFNSVEELANHIDNCNFRSIICENEGCNSRFCASHLKDHDSTCPFKIISCEQKCSANIMRREMDRHCITVCPMKVVNCPFYAIGCRSAVSQCMIEKHRSDDIDSHLWHFLKGIYKEASGDDLNNRVEQIIQVSKQ* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2074 318 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 316 IPR043211 -
Pvu1g2074 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 285 IPR013083 -
Pvu1g2074 318 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Pvu1g2074 318 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 316 - -
Pvu1g2074 318 SUPERFAMILY TRAF domain-like 209 277 - -
Pvu1g2074 318 ProSiteProfiles Zinc finger TRAF-type profile. 217 269 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2074 Pvu-Chr1 46568102 46569401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2074 - - pvu:PHAVU_001G200100g 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2074 1 46568102 46569401 Pvu1g2074 1 46568102 46569401 ECH
Pvu1g2074 1 46568102 46569401 Pvu7g2707 7 50106420 50110978 PCT