Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2073 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGAAACCGCGGCGGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGAAAATGCTAGTGATAGTGATGATTCTGATGGGCAGAAGCGTGTTGTGCGGTCGGCGAAAGATAAGCGTTTCGAGGAGATGGCGTCCACCGTTGACCAGATGAAGAATGCCATGAAGATTAATGATTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTTATGCGTGTCACTGAGTCTGTGAAGGTTCCGAATCTCTACATCAAGACGCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACACCATGAAGCAGAAGCTGAAGAAAAATAATAAGCAGTACGAGGAGTTGATTAACAAGTGTAGGGAGAATCCCGAGAGTGACGAAGAGAAGGAAGAAGAGGAGAGCGAGGAAGAGTATGAGAGCGATGATGAAATTATTGAGCTAGAGCAGCTTCGGAAACCAGAAGCAAAATCTGATTCTGAAACCTCTCAGTATGATGATGAAAAGGCTGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGATCGGCTATTGGATAGACAATTTATGAAAGACCCTAGTGAGATCACTTGGGACACGGTTAACAAGAAGTTCAAAGAGGTCGTGGCTGCTAGGGGCAGAAAAGGGACTGGGAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCTAAGACACCTGCACAGAAGTTGAAAATTCTGTTCAGTGTGGTTTCTGCTCAATTTGATGTCAATCCAGGGCTCAATGGGCATATGCCCATAAATGTGTGGAAAAAATGTGTGCAAAACATGCTGTCCATCCTTGATATTCTAGTGCAGCATCCAAACATATTGGTTGATGATTCGGTTGAGCCAGAGGAGAACGAAACTCAGAAAGGTATTGACTATAATGGACCAATTCGGGTCTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGACGTTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAACCCTTGTTTCTGGTTCTAGCTCAAAATGTCCAGGAATATCTTGAAAGAGTTGGAAACTTTAAAGCTGCCTCTAAGGTGTCCTTGAGGAGAGTTGAACTCATTTACTACAAACCGCAAGAAGTTTATGATGCAATGAAAAAATTGACTGAGCTGACAGAGGATGGAGATGTTCAAGGGGAGGCTAGTGAGGAGTCTAAAGGATTTGAGGAATCAAGAATTCCTACTGCATTTATTGCTACCCCAGAGGTTGTGGCCCGGAAGCCCACATTCCCTGATAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGTACGGAGATGAGCGAACTAAAGCACGTGCTATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATTGCCCGTGATCTGCTTCTTATGAGTCATTTGCAAGATAGTGTTCAACATATGGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGATTGGACTGATTTCTGAAGCACATGGTTGTCTGTCTGAACTGTACTCTGGTGGAAGGGTAAAAGAGTTACTTGCCCAAGGTGTGTCACAAAGCCGCTATCACGAGAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGAAGGCAAATGCCATATCATATGCACATCAATCTCGAGCTCCTGGAATTAGTACATCTGGTATCTGCCATGCTGCTGGAAATTCCTAATATGGCAGCCAATGTTCATGATGCTAAACGCAAGGTAATATCTAAGAATTTCCGTCGCTTGCTTGAGGTAAGCGAGAAGCAAACATTCACTGGTCCACCGGAAAATGTGAGAGATCATGTTATGGCTGCCACAAGGTTTCTCATAAAGGGAGACTACCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAAAAATCGAGATGCCGTGCTTGAAATGCTGAAAGACAAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTCTTCTTCTTATGAATCCCTGAGCCTGGATCAACTTACAAAAATTTTTGATCTCTCTGTTTCTTCTACTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGTGTTGTTTTCCAAGATGTTGAATACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAGAGAGCAACGGAAGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGTAGAGATGGCCAGGACTATGCCACTGCTGCTGCAGGTGGTAGTGGAAATGCCTCTTCGGGTGGTAGATGGCTAGACCAGTCCTTTTCTCAGTCAAGGCAAAGCAGTGGACGTGCTGGATATGGTGGTGGAAGGCCAATGGCTTTAGGTCAAGCAGGCATGGGTTCCAGGGATCGAACAGGGCGGGGAACAGGTGGTGGCTATCAGAGTGGACGATATCATGATGGCTCTTATGGAGGTTATGGGAGGACTCAAGGGGGTTCTGCGTTAAGGGGACCCCATGGCGATACATCCACACGCATGGTTAGCCTTAAGGGTGTTCGAGCTTAA 2823 0.4492 MASRFWTQGGSDSEEEESDYDEEVETAAGESASQAVTSRYLQENASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESVKVPNLYIKTLVMLEDFLAQALANKDAKKKMSSSNAKALNTMKQKLKKNNKQYEELINKCRENPESDEEKEEEESEEEYESDDEIIELEQLRKPEAKSDSETSQYDDEKADAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLKILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLSILDILVQHPNILVDDSVEPEENETQKGIDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVSLRRVELIYYKPQEVYDAMKKLTELTEDGDVQGEASEESKGFEESRIPTAFIATPEVVARKPTFPDNSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLELVHLVSAMLLEIPNMAANVHDAKRKVISKNFRRLLEVSEKQTFTGPPENVRDHVMAATRFLIKGDYQKAFDIIVSLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKIFDLSVSSTHSIVSRMMINEELHASWDQPTGCVVFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYATAAAGGSGNASSGGRWLDQSFSQSRQSSGRAGYGGGRPMALGQAGMGSRDRTGRGTGGGYQSGRYHDGSYGGYGRTQGGSALRGPHGDTSTRMVSLKGVRA* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2073 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 874 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu1g2073 940 Gene3D - 727 795 IPR036388 -
Pvu1g2073 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu1g2073 940 MobiDBLite consensus disorder prediction 175 193 - -
Pvu1g2073 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 939 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pvu1g2073 940 MobiDBLite consensus disorder prediction 12 26 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 843 869 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 133 229 - -
Pvu1g2073 940 SMART PINT_4 721 809 IPR000717 -
Pvu1g2073 940 SUPERFAMILY "Winged helix" DNA-binding domain 716 791 IPR036390 -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 155 174 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 135 154 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 45 63 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 194 229 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 1 63 - -
Pvu1g2073 940 Pfam PCI domain 660 788 IPR000717 -
Pvu1g2073 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 939 - -
Pvu1g2073 940 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Pvu1g2073 940 Coils Coil 144 171 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 30 44 - -
Pvu1g2073 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Pvu1g2073 940 MobiDBLite consensus disorder prediction 839 940 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2073 1 940 Eukaryotic Initiation Factors Gene Family AT3G56150 67.474 0.0 1195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2073 K03252 - gmx:100805203 1549.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2073 1 46559997 46564096 Pvu1g2444 1 49676874 49683963 ECH
Pvu1g2073 1 46559997 46564096 Pvu1g2073 1 46559997 46564096 ECH