Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2067 ATGGACTCTCAGGTGAAGCATGCTCTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGGCAGGTGACCCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAAGGACCTGTTAGAGAAGGAGACATTCTCACCCTCCTCGAATCCGAGAGGGAAGCAAGAAGATTGCGCTAG 198 0.4798 MDSQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2067 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pvu1g2067 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pvu1g2067 65 Gene3D - 1 65 IPR012340 -
Pvu1g2067 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pvu1g2067 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Pvu1g2067 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pvu1g2067 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Pvu1g2067 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2067 Pvu-Chr1 46521813 46523264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2067 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 3.20e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2067 K02979 - gmx:100790570 102.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2067 1 46521813 46523264 Pvu1g2067 1 46521813 46523264 ECH