Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2060 ATGCGGAGCTTCAGGATGAGAAACCTATTGTGCCGTGTAAAGAGAAGAACAAAGAAAACCATTAGAAACAGAAAAACAACCACAGGAAACTGCATTTCCATATCAAAAGAGCTAGCACGTCTAGTGGAACAACAGCATGAAGAAGAAGTTGTTGAGGATGGTTTCAGCATCAAAAGTTCTGCTCCATCGCACACTCACGGTGTTCAACCCTTGGGAAATCTCTATCTGAACCCCCGTTCCATTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACTCTTTCGGATGAGCTTGTTCTTGACATGCTCGGGTTTTTGGATGCTTCTTCCTTAGGGGTTTTGGCCGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAAAACCTTCTTTCTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACCTATGTTTCTGCCTGTTACCCTTCATTTGGTAACTCCGATATTGCTCTTGGGGGTCTCAAAGTTAGAGACTTTTTCTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGGGGAATTTCGGTTGAGGAGTTTGTGCTGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCGTTGGGAAATTGGGATAGGGATTATTTGGAAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGACTACTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTATATTTGTTTGATCCTAAGTTTGCTGAAAAAGTTCCACAATTGGGTGATGAATATGAAGTTCCAGTGTACTTTAGGGAAGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCCTCTTTCCATGTTGATCCGAATTCGACCTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCACCTGGTGTTCATCCCAGTCCTGATGGGGCCGATGTCGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTGGAAAAAGAAACCAATTGAGTGTGTGTGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGGTGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAATGTCTTGGATTTTCTTAGAAGGCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATCGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTTCCCTTCTGGGATTCTGTCACAGATGCTAATGCAGGAGCTTTCAAGTTCTCTTTCTAG 1539 0.436 MRSFRMRNLLCRVKRRTKKTIRNRKTTTGNCISISKELARLVEQQHEEEVVEDGFSIKSSAPSHTHGVQPLGNLYLNPRSINSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPLWKNLVLENLLSGFQYKGSWKSTYVSACYPSFGNSDIALGGLKVRDFFSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALGNWDRDYLERLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPQLGDEYEVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVNVLDFLRRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLPFWDSVTDANAGAFKFSF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2060 512 ProSiteProfiles F-box domain profile. 88 134 IPR001810 GO:0005515
Pvu1g2060 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 57 510 - -
Pvu1g2060 512 Gene3D - 82 159 - -
Pvu1g2060 512 SMART cupin_9 278 447 IPR003347 -
Pvu1g2060 512 Gene3D Cupin 183 432 - -
Pvu1g2060 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Pvu1g2060 512 Pfam Cupin-like domain 212 430 IPR041667 -
Pvu1g2060 512 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 57 510 - -
Pvu1g2060 512 SUPERFAMILY F-box domain 85 155 IPR036047 GO:0005515
Pvu1g2060 512 SUPERFAMILY Clavaminate synthase-like 204 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2060 Pvu-Chr1 46468319 46470958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2060 82 436 Glycosyltransferase AT1G78280 39.560 1.15e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu1g2060 Cupin_8 1.7e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2060 - - gmx:100782241 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2060 1 46468319 46470958 Pvu1g2060 1 46468319 46470958 ECH