Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2053 ATGCGTTCTCAGAAGGTTTTAGAGATGGAAGACAATAAAGAAAGTAAAATGATATCTGCTGCGGCCTTTGTAGAAGGGGGGATTCAGGACTCCTGTGATGATGCTTGCAGCATATGTCTTGAGGATTTTTGTGCAAGTGATCCTTCAACGCTCACTAATTGCAAGCATGAGTTTCACCTACACTGCATTCTCGAATGGTGTCAGAGAAGCGCCCAGTGTCCTATGTGTTGGCAATCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGCAGTAGAGCAAGAGAGGAAGTTGAGGGCTATCCCATCAAGAAATGCTACTATTTTTCATCACCCTGCATTTAGTGATTTTGAATTGCAGCATTTGCGCATGAGTATAAATGATAGTGAGCTTCAAGACCGAATTCTTCAACATTTAGCTGTTGCTGCAGCGATGAGGAGAGCAAACCAACATGGTCGTAGGGCAGGACAACGAACTCGTTCATCAGCTCATGGTCATCCACAGTCTTTAGTGTTATCTAATCAGACTATAGCACCTGCATTGAGTCCTGATTCAGCTGCTGAAGAGGAAAATGATCAAACGAGAATTCATAATGCAATTCCATCTACCCCAATAAAATCTGAGAGAAATGAAGCATTGCAACGGATCCTGCACGTTCAAACTCAAAGCTCTTCTTCAGCTTCTGGATCTAGCATCACAAGTCGCCAAAGAATTTACTCCAATGATAGAGGCTCTACTACTCGCGCATCATCAGTAAACGAAGATAGAGCAGAGCCATCAGAATTGCAGCCACATTCTGATTCGCTGCGGTCCAGACTCAATGCGGTGTCCACGAGATACAAAGAATCATTCTCAAAGGGCGCAAGGGGATGGAAAGAAAGGTTGTTCTGTCGTAGTTGTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAATGCTGAGATTGCTAGTGTATCCGGATTAAAGGAATCCCGTGAATGTAGTGAAAATAGTAAATCTGTGGTGGGTACTTCTTTGTCTAGTCATATGGAGGAATGTTCCATTCAAGAGGTGAGCAACCAGAACGATGTTGAAGCTAGCGGGGAGACCTCTTCACATGATGACAATACATCATCTGCTTGTTTTCCTACCTCACATTTAAATTGA 1161 0.4324 MRSQKVLEMEDNKESKMISAAAFVEGGIQDSCDDACSICLEDFCASDPSTLTNCKHEFHLHCILEWCQRSAQCPMCWQSISLKDPTSQELFEAVEQERKLRAIPSRNATIFHHPAFSDFELQHLRMSINDSELQDRILQHLAVAAAMRRANQHGRRAGQRTRSSAHGHPQSLVLSNQTIAPALSPDSAAEEENDQTRIHNAIPSTPIKSERNEALQRILHVQTQSSSSASGSSITSRQRIYSNDRGSTTRASSVNEDRAEPSELQPHSDSLRSRLNAVSTRYKESFSKGARGWKERLFCRSCSMSELGSETRRREMNAEIASVSGLKESRECSENSKSVVGTSLSSHMEECSIQEVSNQNDVEASGETSSHDDNTSSACFPTSHLN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2053 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 377 - -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 185 208 - -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 335 386 - -
Pvu1g2053 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 85 IPR013083 -
Pvu1g2053 386 SUPERFAMILY RING/U-box 29 84 - -
Pvu1g2053 386 SMART ring_2 36 76 IPR001841 -
Pvu1g2053 386 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 377 - -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 149 172 - -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 221 255 - -
Pvu1g2053 386 Pfam Ring finger domain 35 76 IPR001841 -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 325 386 - -
Pvu1g2053 386 MobiDBLite consensus disorder prediction 221 272 - -
Pvu1g2053 386 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2053 Pvu-Chr1 46407114 46411184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2053 33 84 C3H Transcription Factor Family AT4G00335 46.154 4.48e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2053 K19043 - gmx:100800419 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2053 1 46407114 46411184 Pvu1g2053 1 46407114 46411184 ECH
Pvu1g2053 1 46407114 46411184 Pvu7g2738 7 50345138 50349987 PCT