Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2050 ATGGGAAACAATTGTGTCGGGTCAAAAATCTCGGATTATGCACTGCTTTCCTGTGTTCTTCCGAGTTCATTCGTGTGGCTTCATCATCATCAAACGAGGGTGGTCACAGAAATTTCTGATGCCACTTCACTTGTGACTAAAATTGAAGACACAAATGCTCTAGAGAATGTTCAGGAAAAGGCTCCACGAGTGGTGAAAATTAGCAAAGAGAGTAACATGCCTTCAGAGCCTGCAATTAAAAAATTAGCCTTTAAAGTGAAGAGGGTAGCAATAGGGCTTCAAGAAGAGTCAATTTTGAAGAGAAAAAGTGGTCACTTTAAGGAGTACTATAATTTGGGAGAAGAGCTTGGAAAGGGACAGTACGGAACAACATTCCTTTGTACTGAGAAAGCAACTGGGAAAAAGTACGCTTGCAAGTCCATTCCAAAAGTGAAACTGTTGATAGATGAAGACGTGGAAGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAGGGGTGTCCTAATGTGATATCAATTAAAGGGGCTTATGAGGATGGTGTTGCAGTTTTTGTTGTGATGGAGTTATGTGAAGGGGGTGAACTTTTTGATAGGATTGTGGAAAGGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAATTAGTATTATAGAGGGGTGCCACTCCCTTGGGGTGATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGTCAATGAAGACTCCACACTAAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGTGACATTTTTAGGGACGTGGTTGGAAGTCCTTATTATATCGCACCTGAAGTTCTACGAAGACATTATGGTCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTTTTATGTGGTACAGCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAGGTTTTGCATGGTGATATCGATTTCACTTCAGATCCTTGGCCGAATATCTCTGAAAGTGCTCGAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCACAAGAGGTTCTTCGTCACCCTTGGATTCAAGTGGATGGAGTTGCTCCAGACATGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAATTTTCTGTAATGAACAAGCTAAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTCTGAACTGAAAGTAACGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACGTTAGAAAAGCTCAAGGCTGGATTGAAAAGGCTTGGTAATAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCTTTTAGTAGCAGCCTTTTCATTTTTTGATAGAAGTGGAAGCGGCTACATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGTATCGAGAATGTATGCTTCGAGGAAATGATCCAAGAAGCTGATCAGAATAACGATGGCCGAATAGACTACGATGAATTCGTGGCTATGATGCTGCAAGGCAATGCAGATTTAGGTAGAAACAGGATAAAGGGTGGCACTGATTTTAGCATTGGATTTAGGGAGGCACTATCAGTGTGTTGA 1728 0.408 MGNNCVGSKISDYALLSCVLPSSFVWLHHHQTRVVTEISDATSLVTKIEDTNALENVQEKAPRVVKISKESNMPSEPAIKKLAFKVKRVAIGLQEESILKRKSGHFKEYYNLGEELGKGQYGTTFLCTEKATGKKYACKSIPKVKLLIDEDVEDVRREIEIMHHLEGCPNVISIKGAYEDGVAVFVVMELCEGGELFDRIVERGHYTERKAAKLARTIISIIEGCHSLGVMHRDLKPENFLFVDVNEDSTLKAIDFGMSVFFKPGDIFRDVVGSPYYIAPEVLRRHYGPEADVWSAGVIIYILLCGTAPFWGESEQEIFEEVLHGDIDFTSDPWPNISESARDLVRKMLVRDPRKRITAQEVLRHPWIQVDGVAPDMPLDSAVLSRLKQFSVMNKLKKMALRVIAENLSEEEISELKVTFKMIDTDNSGQITLEKLKAGLKRLGNNLSEPEILDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDLLVAAFSFFDRSGSGYITQDELQKACEEFGIENVCFEEMIQEADQNNDGRIDYDEFVAMMLQGNADLGRNRIKGGTDFSIGFREALSVC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2050 575 Gene3D - 377 550 - -
Pvu1g2050 575 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Pvu1g2050 575 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Pvu1g2050 575 SUPERFAMILY EF-hand 397 548 IPR011992 -
Pvu1g2050 575 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 63 553 - -
Pvu1g2050 575 SUPERFAMILY Protein kinase-like (PK-like) 108 369 IPR011009 -
Pvu1g2050 575 SMART serkin_6 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2050 575 CDD STKc_CAMK 110 367 - -
Pvu1g2050 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 553 - -
Pvu1g2050 575 Gene3D Phosphorylase Kinase; domain 1 89 186 - -
Pvu1g2050 575 ProSiteProfiles EF-hand calcium-binding domain profile. 522 552 IPR002048 GO:0005509
Pvu1g2050 575 Pfam EF-hand domain pair 415 476 IPR002048 GO:0005509
Pvu1g2050 575 Pfam EF-hand domain pair 490 546 IPR002048 GO:0005509
Pvu1g2050 575 Pfam Protein kinase domain 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2050 575 Gene3D Transferase(Phosphotransferase) domain 1 187 376 - -
Pvu1g2050 575 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Pvu1g2050 575 SMART efh_1 521 549 IPR002048 GO:0005509
Pvu1g2050 575 SMART efh_1 451 479 IPR002048 GO:0005509
Pvu1g2050 575 SMART efh_1 487 515 IPR002048 GO:0005509
Pvu1g2050 575 SMART efh_1 415 443 IPR002048 GO:0005509
Pvu1g2050 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Pvu1g2050 575 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Pvu1g2050 575 ProSiteProfiles Protein kinase domain profile. 110 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2050 575 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Pvu1g2050 575 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Pvu1g2050 575 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2050 Pvu-Chr1 46377565 46381535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2050 86 569 EF-hand Containing Proteins AT5G04870 73.196 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu1g2050 Pkinase 2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2050 K13412 - gmx:100814475 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2050 1 46377565 46381535 Pvu7g2406 7 47402023 47409431 PCT
Pvu7g2741 7 50375268 50380318 Pvu1g2050 1 46377565 46381535 PCT