Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2042 ATGAGCAGCAACAGTGCTATTAGTTCCCCTGGATTCCTTTCCTCAAGCAACATCAGTGGCTATAGTTATGGCATAGGAATCTCTGTTGGAATTCTCTTGCTCATCATAACCATCACTCTAACTTCCTACTTCTGCACCAGAACACATGTCTCATTTGCTGCAGCACCTAGGAACAGGAGACTCACCCCGAATGTTCTTCAACCACACCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACGATTCTGAGTTATCCAACTCTGCTGTACTCTGAAGCTAAGGTCCAGAAGTCTGATTCCACTGCAACATGTTGCTCCATTTGTTTGGCAGATTACAAGGGTACTGATATGCTTCGCGTGCTACCTGATTGTGAACACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACACCCCTCTCAACTCCTCTGGCTGAAGTGGTTCCATTGGCTAGCAGACAGGATTCATAG 516 0.4516 MSSNSAISSPGFLSSSNISGYSYGIGISVGILLLIITITLTSYFCTRTHVSFAAAPRNRRLTPNVLQPHHSIVDVSLDEATILSYPTLLYSEAKVQKSDSTATCCSICLADYKGTDMLRVLPDCEHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2042 171 SUPERFAMILY RING/U-box 85 152 - -
Pvu1g2042 171 CDD RING-H2_PA-TM-RING 104 147 - -
Pvu1g2042 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Pvu1g2042 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 169 IPR045899 -
Pvu1g2042 171 Pfam Ring finger domain 105 147 IPR001841 -
Pvu1g2042 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 151 IPR013083 -
Pvu1g2042 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 169 - -
Pvu1g2042 171 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2042 Pvu-Chr1 46325583 46326362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2042 14 168 C3H Transcription Factor Family AT5G06490 49.718 1.56e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2042 - - gmx:100811799 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2042 1 46325583 46326362 Pvu7g2749 7 50509285 50510263 PCT