Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2041 ATGCCTAGGAGAAGGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAAAAGAAATCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACCACCCTTTGTGATGTGAATGCATGTGTAATCATCTATGGTCCAGGGGATAACGTGCCAACTGTGTGGCCATCCCATGAGATTGCTAACGAGTTGCTCACCAAGTTTGAGAATGCCCCATTGCCAGATCGGGTAAGAAAAAATGTTACCCCACAAGTTTATATTGAGCAGATGAATAAAAAGATTGAAAATCAACTCGTGAAACTCAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCATGCATAAAATACATGATGGTAAGTCTTTATCAGATCTTGATGCTACTGATATATGTCGTTTACTTTGCTATGTGGAGGGAAAACTGAAGTGTGCTGGAGGAAAAGTTGACATTTCTAAACAACAGTCATCAACTAAACCTCCAACGCCACTACTTTCTTTTCCTCTGCAGAATGATATTGTTTCTTGTGCTGACATAGATGAACAAGTTTTTCCACAACAACCATCCTTAGATTCAATGAAAGAAACTGATCCAATGAAAAGTGATTCTGATAATAATATGGCCAGCAATACGGGACTTCCACCACTACAACCACAAACACATCTTAGTGATGATATTATGGCGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGATATGGTGTTACCTTCAGGAAATTTTAATGATGTGATTGATGATAATGACTTAGGGTTTGGGATGTTGCCTCAAGATAATTTTATAGGTCTTTGTGATAATGGTGATTTAGGGCCATTTTATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATGGTCATCTTATGGAAGTTTTGGAGACATAAGTGAGAGTGATATGATGTTGCCCTTCAACAATAATGTGCAAGACAACATTAATGGAACTTTCATGGGAACAGATGTTGAAAATCAAGGTGTTTCCATTAACAATATAGAGTTATCGGGTGATCAAAGCACCTTTGGAGCCAACAATGATGGAGCTATCTTGGGGAAATCCAGTACAAACTTTGTTAGCACCACCAGTGGAGGAAACTTCAACTCTTGA 1146 0.3752 MPRRRKVTLKLIENFVARKARYKRNRENLLKKVEDLTTLCDVNACVIIYGPGDNVPTVWPSHEIANELLTKFENAPLPDRVRKNVTPQVYIEQMNKKIENQLVKLKKKNDEKDMSNFMHKIHDGKSLSDLDATDICRLLCYVEGKLKCAGGKVDISKQQSSTKPPTPLLSFPLQNDIVSCADIDEQVFPQQPSLDSMKETDPMKSDSDNNMASNTGLPPLQPQTHLSDDIMALSQVNFESLNLDDIDMVLPSGNFNDVIDDNDLGFGMLPQDNFIGLCDNGDLGPFYGSSSGEITGNDIWSSYGSFGDISESDMMLPFNNNVQDNINGTFMGTDVENQGVSINNIELSGDQSTFGANNDGAILGKSSTNFVSTTSGGNFNS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2041 381 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 224 - -
Pvu1g2041 381 MobiDBLite consensus disorder prediction 190 219 - -
Pvu1g2041 381 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 Coils Coil 91 115 - -
Pvu1g2041 381 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 55 IPR002100 GO:0003677|GO:0046983
Pvu1g2041 381 Coils Coil 12 39 - -
Pvu1g2041 381 Gene3D - 16 122 IPR036879 GO:0003677|GO:0046983
Pvu1g2041 381 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 3 224 - -
Pvu1g2041 381 SUPERFAMILY SRF-like 4 91 IPR036879 GO:0003677|GO:0046983
Pvu1g2041 381 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2041 Pvu-Chr1 46317741 46318886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2041 4 170 Type I MADS-box Gene Family AT1G65300 31.176 9.60e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu1g2041 SRF-TF 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2041 - - var:108328520 571.622