Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2040 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTTTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAAGCTGTTCATGGGGGTGAGTCTTGTGTACAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAGACCAGCATGCTGTCAATAAGCCTTCGGCAAGAGGAGCTGAACATGTGTTGGGCAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGAAGCGCAAACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCCCATTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCCTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCGCGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACAAGAAAATCTGCTAATGGAAATGGCAAAACTGGAAATGAAGTGCATGAAACTGTAGGTGAACGATTGCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCGGGCTCAGAAGTGACTAGCATGTATTCACGTGGAGGTCTTGAAAGATTTTCCCTCAATCATTTTGGATCTTCTGTGCACACTCTGGTAGACATGATAGATGGTGGGCGTGGTATGATCATACCCACCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 993 0.4451 MAMQTVYLKEHEGNAPNFVGALSSAASAPWWSAFGSQAVHGGESCVQMKPFSLELPNCIDQHAVNKPSARGAEHVLGKGHTTQFTIFPDDCKMSDEAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNEVHETVGERLHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLERFSLNHFGSSVHTLVDMIDGGRGMIIPTKWAAAAGNCCNLKV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2040 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Pvu1g2040 330 MobiDBLite consensus disorder prediction 209 279 - -
Pvu1g2040 330 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 329 - -
Pvu1g2040 330 MobiDBLite consensus disorder prediction 241 279 - -
Pvu1g2040 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Pvu1g2040 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Pvu1g2040 330 Gene3D - 160 222 - -
Pvu1g2040 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 329 IPR001289 GO:0003700|GO:0006355
Pvu1g2040 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Pvu1g2040 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2040 Pvu-Chr1 46297378 46303053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2040 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.241 3.16e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu1g2040 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2040 K08064 - gmx:100527677 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2040 1 46297378 46303053 Pvu7g2751 7 50525609 50531269 PCT