Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2039 ATGGCTGCTGCAGCTTCTTTTTCCTCCTCTATCTGCAACAGAATATACAATCTTTCCCTCACCCACTCTTCCGTTTCACTCACCTCCAACTTCCTTCAGAGACCCATTTTCCAAAAACAACTCAATCTTAACCTCAAGTCCCAAAGCTTCAGTCTTTCATTTCTCCCACTTCATCGGCTGTCCCCACCTTCCGCCACCTTCGATGGGCTGGAAGTGGGTCAAGACATAACAGAGTCCCGACAAGACGAGCCAGTAGCAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAGGTTTCAGACTACGATAACGATGCTGGGAGGCTCTATATTGGAAACTTGCCATTTTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGCAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGGTAGAAGCAGGGGATTTGCATTTGTTACAATGGAAAGTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGATTGGTAATGGGGGCAAAAATAAGGGACAACTACAGAGGCTTTGTAGACAGCGCTTACAAGATCTATTGTGGAAACCTTGGCTGGGGAGTCAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAGCCAGGCATATTGAGTGCCAAGGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCTTTTACAACTGCCGAATCTGCAGCAGCTGCCTTGGACATTATGAATGGTGTGGAAGTGCAAGGTCGCCCATTGCGGTTGAATATAGCTGAAACAAGGACACCACCATCTCCTCCAGTAATCGAGGAAAATGCAGGAAGCAATGCTGAAAGCTCGGAATTGGTTTCAAGTGCCAGAACATAA 954 0.4675 MAAAASFSSSICNRIYNLSLTHSSVSLTSNFLQRPIFQKQLNLNLKSQSFSLSFLPLHRLSPPSATFDGLEVGQDITESRQDEPVAETSEKTEQEEERKVSDYDNDAGRLYIGNLPFSITNSQLAELFAEAGTVASVEIVYDRVTGRSRGFAFVTMESVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKIRDNYRGFVDSAYKIYCGNLGWGVNSQGLREAFAEQPGILSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDIMNGVEVQGRPLRLNIAETRTPPSPPVIEENAGSNAESSELVSSART* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2039 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Pvu1g2039 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Pvu1g2039 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pvu1g2039 317 MobiDBLite consensus disorder prediction 301 317 - -
Pvu1g2039 317 PANTHER OS02G0815200 PROTEIN 3 299 - -
Pvu1g2039 317 Gene3D - 198 294 IPR012677 -
Pvu1g2039 317 Gene3D - 69 191 IPR012677 -
Pvu1g2039 317 CDD RRM_HP0827_like 109 185 - -
Pvu1g2039 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pvu1g2039 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Pvu1g2039 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Pvu1g2039 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Pvu1g2039 317 MobiDBLite consensus disorder prediction 77 102 - -
Pvu1g2039 317 MobiDBLite consensus disorder prediction 287 317 - -
Pvu1g2039 317 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 299 - -
Pvu1g2039 317 SUPERFAMILY RNA-binding domain, RBD 102 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2039 Pvu-Chr1 46292355 46295878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2039 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 34.518 1.37e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2039 - - gmx:100814852 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2039 1 46292355 46295878 Pvu7g2381 7 47123651 47126499 PCT