Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2036 ATGAACGACTTGTTATCGAGTTTGTTCTCCAAGGGAAAACAGCAGCAGCAGCAACAAGAAGGGCAGCACGTGATCGAAATAACACAAGGTGGCATGGCGTTGGACAAGTTCTTCCAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGGCTCAAACCAAAACGGAAAAGCGCTTTACAGCCCCAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTAGACGTGGCTCTTGCTCTCACCAAAGCCAAGCTGGTGAAGACTCGCTTGGAGGCTCTCCGCCGCGCCAACCAAGCCACCCTCTCCTTGCCCGACTGTGGACCCGGTTCGTACTCCGACCGGACCAGAACGGCACTGGTCGGAGCTTTGACCAAGAATCTGAAACAGTCCATGGAGAATTTCAATAAGCTAAGGGAACAGATATCGTACGAGTATAGAGATACTGTGCAACGTAGATACTACGCTGTTACCGGAGAAAATCCTGATGCTGAAACTATTGATCTCCTCATCTCTACAGGTGAGAGTGAAAATTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTAAAAGAGATAGAGAGAAATCTACAGGAGCTGCACCAAGTGTTCTTGGACATGGCACTGTTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGAGCTTGCAAATTCCTTCGTGGGCAAAGGGGTGCATCATTTGCAGGTTGTGAGGAATCATCAGAAGAACACCCGTAACTTGACCTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTCATAGTTCTACCCATTGTTTTCAGAAATTGA 897 0.4916 MNDLLSSLFSKGKQQQQQQEGQHVIEITQGGMALDKFFQEVESVKEELKELERLHLSLRGSNQNGKALYSPKGVRELRSRMDLDVALALTKAKLVKTRLEALRRANQATLSLPDCGPGSYSDRTRTALVGALTKNLKQSMENFNKLREQISYEYRDTVQRRYYAVTGENPDAETIDLLISTGESENFLQKAIQQQGRATIMDTIQEIQERHGTVKEIERNLQELHQVFLDMALLVQHQGEHLDDIESHMELANSFVGKGVHHLQVVRNHQKNTRNLTCFAILLFIIMLVIVLPIVFRN* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2036 298 CDD SynN 34 191 IPR006011 GO:0016020
Pvu1g2036 298 Gene3D - 193 296 - -
Pvu1g2036 298 SMART tSNARE_6 199 266 IPR000727 -
Pvu1g2036 298 PANTHER SYNTAXIN 13 293 IPR045242 -
Pvu1g2036 298 Pfam SNARE domain 242 292 IPR000727 -
Pvu1g2036 298 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Pvu1g2036 298 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pvu1g2036 298 SMART SynN_4 29 155 IPR006011 GO:0016020
Pvu1g2036 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Pvu1g2036 298 SUPERFAMILY t-snare proteins 32 259 IPR010989 GO:0016020|GO:0016192
Pvu1g2036 298 Coils Coil 34 61 - -
Pvu1g2036 298 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g2036 298 Gene3D - 34 161 - -
Pvu1g2036 298 CDD SNARE_syntaxin1-like 203 264 - -
Pvu1g2036 298 Coils Coil 129 149 - -
Pvu1g2036 298 PANTHER SYNTAXIN-121 13 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2036 Pvu-Chr1 46276253 46278503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2036 28 278 SNARE and Associated Proteins AT3G11820 63.347 2.36e-114 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2036 K08486 - gmx:100790221 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2036 1 46276253 46278503 Pvu7g2752 7 50538029 50540101 PCT