Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2035 ATGCACGACTTGTTGTCCACCACCTCCTCCAGCCGCAGCTACCAATTTCCGCCATCGGATCACAGTGTAATCGAGATGGCCGGCGGCGACGACGACGACGACGGAGCAAAGAGTCTGGCCAAGTACTTTGGCAACGTGGAAGCAATAACGGAAGAGCTGAACAAGGTGGAGCAGTTGAAGCAGAGTCTGAAGAGGTCTCACGAACAAGGCAAGACTCTTCACAACGGTAAAGCCATGAAGGACCTTCGCTTCTCCATGGAAGCCGAAGTGGCACTCGCTCTCGAGACCGCGAAGTTCGTCAGGTTCCAGTTGGAGGCGCTCGAACGCGCCAACGCCGATCACCGGAGCCTTCCCGGTCGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCCGTGGTGATCTCCCTGTGGAAGAAGCTGAAGGATTCCTTGGACGGATTCAATGAACTGCGTCACCAGATAAACACGGAACACCGTGAGACCGTTCAACGCCAATATTTCACCGTCACCGGCAATAATCCCGACGACAGTACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTACTACAAAGAGCCATTGAAGAGCAGGGTAGGGGAAGAATTGAGGACATTATGAATGAAATAAAAGAGAGGCATGATGAGATGAAAGAGTTGGAGAAGAATCTGAAGGAGTTGCATCAGGTGTTCCTTGACATGACAGTGCTGGTTGAATCTCAAGGGGAGCAATTGGATGATATAGAAAACCAAGTGGCAAGAGCAAACTCCTTCGTCAGGAATGGGAGTCAGAATCTGGAAATTGCAAGGAAGGAGCAGAAAAACCACCGCAAGTGGGGCTACTGTGCTATTATCCTTCTTGTAGCAATTGTATTGTTTGTGGTGCTCTTTTTCGTAAGACCATGGGAAAAGTAA 921 0.5092 MHDLLSTTSSSRSYQFPPSDHSVIEMAGGDDDDDGAKSLAKYFGNVEAITEELNKVEQLKQSLKRSHEQGKTLHNGKAMKDLRFSMEAEVALALETAKFVRFQLEALERANADHRSLPGRGPGSSSDRSRTSVVISLWKKLKDSLDGFNELRHQINTEHRETVQRQYFTVTGNNPDDSTLDLLISSGESENLLQRAIEEQGRGRIEDIMNEIKERHDEMKELEKNLKELHQVFLDMTVLVESQGEQLDDIENQVARANSFVRNGSQNLEIARKEQKNHRKWGYCAIILLVAIVLFVVLFFVRPWEK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2035 306 Coils Coil 46 69 - -
Pvu1g2035 306 SMART tSNARE_6 204 271 IPR000727 -
Pvu1g2035 306 Gene3D - 204 302 - -
Pvu1g2035 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 16 300 - -
Pvu1g2035 306 Coils Coil 205 232 - -
Pvu1g2035 306 SUPERFAMILY t-snare proteins 40 264 IPR010989 GO:0016020|GO:0016192
Pvu1g2035 306 Pfam SNARE domain 245 297 IPR000727 -
Pvu1g2035 306 MobiDBLite consensus disorder prediction 1 18 - -
Pvu1g2035 306 Gene3D - 36 169 - -
Pvu1g2035 306 CDD SNARE_syntaxin1-like 209 269 - -
Pvu1g2035 306 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g2035 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Pvu1g2035 306 SMART SynN_4 34 160 IPR006011 GO:0016020
Pvu1g2035 306 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Pvu1g2035 306 ProSitePatterns Syntaxin / epimorphin family signature. 215 254 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pvu1g2035 306 CDD SynN 39 196 IPR006011 GO:0016020
Pvu1g2035 306 PANTHER SYNTAXIN 16 300 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2035 Pvu-Chr1 46266997 46268356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2035 35 304 SNARE and Associated Proteins AT3G11820 60.741 9.99e-110 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2035 K08486 - gmx:100789318 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2035 1 46266997 46268356 Pvu7g2753 7 50541658 50544487 PCT