Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2032 ATGGACAACGACATCGATGTTCCTTCATTCTTCCTCTGCCCCATTTCTTTACAAATCATGAAGGACCCGGTCACGGTTTCAACGGGCATCACCTACGACCGTGAATGCATCGAAACGTGGCTCTTTTCTAGGAAAAATACCACATGCCCCATCACCAAACAACCCTTGACAGATTACACCGATCTCACCCCCAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACAATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCTGTAAACAAGACTCAGATTTCGAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCACATGCCTCCGAAGACTCAAATCCATCGCTTCGGGAAGCGAGACAAATAAGCGATGCATGGAAGCTGCGGGTGCTGTTGAGTTCCTAGCATCGATTGTAGTCAATAACAACAACGATTCTTCAAATGGGGTTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAGCCTGCTTCACACTCTTGATTTATCTGAACAAGGGTTGAAGACTCTTATTAGCTTCAGAAACGGAGACTTTATTGAGTCTTTGACGAGAGTCATGCAGAAGGGGTTTTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGAAACTGTTGCATCTAAGACAAGAACTTTTCGTGGAACTAGTACAAGTCTTGAAGGATCAGATTTCAACAAAGACATCAAAGGATATCATTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCTGTGGAAGCCGGAACAGTTCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGTGAGATGATGCTGGTGCTGTTGGAGATACTGTGCCAGTGTGCCGAAGGAAGAGCAGAACTATTGAGTCACGGAGCGGGTCTTGCCATTGTTTCAAAGAAGATTTTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTTTGTGTTTCCAAGTTCTCTGCGACTCCACATGTTGTTCAAGAGATGCTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCCAAGGAAAAGGCAAGAGAGATACTCAAATTGCATGCTCGGGTGTGGAAGAATACTCCATGCATACCCAACAATATGCTTTCTTCATACCCGGCTTATGCGTGA 1257 0.4558 MDNDIDVPSFFLCPISLQIMKDPVTVSTGITYDRECIETWLFSRKNTTCPITKQPLTDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPLTCLRRLKSIASGSETNKRCMEAAGAVEFLASIVVNNNNDSSNGVDPNDGSGFELKTTASDEALSLLHTLDLSEQGLKTLISFRNGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVKLLHLRQELFVELVQVLKDQISTKTSKDIIQTLIQFSPWGRNRIKAVEAGTVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLCVSKFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARVWKNTPCIPNNMLSSYPAYA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2032 418 SUPERFAMILY RING/U-box 5 83 - -
Pvu1g2032 418 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pvu1g2032 418 PANTHER WDSAM1 PROTEIN 3 415 IPR045185 GO:0061630
Pvu1g2032 418 CDD RING-Ubox_PUB 11 54 IPR045210 -
Pvu1g2032 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pvu1g2032 418 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pvu1g2032 418 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pvu1g2032 418 SUPERFAMILY ARM repeat 113 384 IPR016024 -
Pvu1g2032 418 Gene3D - 99 403 IPR011989 -
Pvu1g2032 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2032 Pvu-Chr1 46225228 46226832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2032 1 416 U-box Gene Family AT3G52450 56.818 3.77e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2032 - - gmx:100811258 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2032 1 46225228 46226832 Pvu1g2032 1 46225228 46226832 ECH
Pvu1g2032 1 46225228 46226832 Pvu7g2758 7 50605512 50607568 PCT
Pvu7g2757 7 50592942 50594640 Pvu1g2032 1 46225228 46226832 PCT