Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2030 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGTCGCAGCCCCCTCCCTCACACGCTGCGGGAAATCTCGTGTTTCTCAACTCCGCCGCAGTTGCCGGCACCAACAGCAACAACTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCTCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCATTGGAACGCGCTTGACCCGGCCTCGGCGGCGCGTGAAACCCCACGCGCACAGCAGGGCTTGTCTCTGGGGCTTGGGTCGTTCCGGGAGGGTCAGGCGCCGGGGATGTCAGGCGACGACTTGCGCGTGTCGGGCGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAATGGAGCTTCGGGCATTCAGAGCGTACTCTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAACTTTTAGAAGAGGTTGTGAATGTTAACAATGGGACTGGCACCGAGCTGGGTAAAAAGAGTGGTGGACAGAACAAGGTGATTGGAGAATCATCCGCTGCAGGTAGTGGAGATGGTTCAGTTGTTGGGGAAGGGAACGGAAAACGTAGCTCTGAGCTATCGACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCAAAACTAATTGCCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATAGTGGTGTCGTCGTTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGGACATACACTGCCCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCAATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTAAGGCAGCAACGAGCTCTTCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTACCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCATATCCCAAGGACTCGGACAAACACATGTTGGCAAAACAAACAGGGCTAACAAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTACGAAAATGGCAGCCCCACCAGAGAGAGGTCCTTCCAATGAAACCGAGGCTAAAAGTTTTAATTCCAAACAAGAGGTTTCAAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACGTCACAACTTGGTGGGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGATCATCAGAGCTAGAAGGGATCACACAAGGGAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTACCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAACAACTCTCAATGAAATTTGGGGACGATAGGCAAGGCAGAAACGAATCCTCTTTCATGGTAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCCCCAAGGTTTTCAGGTAATGGCGTTTCCCTTACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACACTTCCTCTCCCCACTCTTCTGCAGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2040 0.4966 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNSAAVAGTNSNNSFNPHAPPSHTQQFVGIPLSASQDLNHHSMHAHHDVSALHGFLPRMQYNHWNALDPASAARETPRAQQGLSLGLGSFREGQAPGMSGDDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGTGTELGKKSGGQNKVIGESSAAGSGDGSVVGEGNGKRSSELSTAERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPERGPSNETEAKSFNSKQEVSKSQNTAMVSVSRPSTSQLGGNVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDDRQGRNESSFMVNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINTSSPHSSAAYESISMQNPKRFAAQLLPDFVT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2030 679 MobiDBLite consensus disorder prediction 434 450 - -
Pvu1g2030 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Pvu1g2030 679 Gene3D - 366 445 - -
Pvu1g2030 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 642 660 - -
Pvu1g2030 679 Pfam Associated with HOX 178 314 IPR006563 -
Pvu1g2030 679 SMART prehox3 173 315 IPR006563 -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 641 660 - -
Pvu1g2030 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Pvu1g2030 679 MobiDBLite consensus disorder prediction 201 246 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 156 170 - -
Pvu1g2030 679 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 621 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 434 502 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 139 170 - -
Pvu1g2030 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 621 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 467 502 - -
Pvu1g2030 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Pvu1g2030 679 Coils Coil 247 274 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 517 544 - -
Pvu1g2030 679 MobiDBLite consensus disorder prediction 201 220 - -
Pvu1g2030 679 SMART HOX_1 363 427 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2030 Pvu-Chr1 46197344 46201848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2030 1 678 Homeobox Transcription Factor Family AT2G35940 51.081 4.99e-180 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu1g2030 POX 5.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2030 - - gmx:100810901 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2030 1 46197344 46201848 Pvu1g2030 1 46197344 46201848 ECH
Pvu1g2030 1 46197344 46201848 Pvu7g2759 7 50613221 50617719 PCT