Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2027 ATGCTCCACTCTTCGCTAACTCTTCTCTTCACCCTCCTCTTTTCCCTCACCACTGCCGACCCGCACGAAGTCGAAATACTGCGGCAATTCCGAAACGGGTTGGACAACCCGGACCTGTTGCCGTGGCCGGACAGCGGCGATGACCCGTGTGCTTGGAAGTACATTTTCTGCGACAATAAGAACCATGTGAACCAGATTCAGGCTAAGGGGTTGAACCTGAGCGGTCCTCTGTCGCCGAACCTGAACCAGCTCACGAATCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGTCCATTACCCTCCTTCCGCGGCTTGTCAAATCTCAAATACTTGTATCTTGACAACAACAACTTCGACTCCATCCCTTCAGATTTCTTCGACGGGCTCCAGAGTTTGGAAGTGCTCGCGTTGGACAATAATGACCTCAACGCCAGCTCTGGCGGCTGGCACTTACCGCAGACGCTCCAGGAGTCAACGCAGTTGACCAATCTCTCCTGCATGGGCTGCAACCTCGCCGGCCCATTACCGGAGTTTCTCGGAACGATGAACTCGCTGTCGTTTTTGAAGCTCTCCAACAACAACTTAACGGGCGAGATTCCCCTGAGTCTAAACGACTCTGCGTTGCAGGTTCTCTGGCTGAATAACCAGCGGGGGGAGTGTCTTACTGGAAGAATTGACGTTGTGGCCTCCATGGTTTCGCTCACGAGTTTGTGGCTTCACGGGAACTCGTTCACTGGAACGATTCCCGATAACATTGGGGATTTGAGCTCTCTACGGGAACTTAACCTTAATGGGAACAACCTCGTTGGGTTGGTTCCTCAAGGTTTGGGTGACTTGAAGCTGGACAAGCTGGACTTGAACAACAACCATTTTATGGGACCGATTCCCAATTTTAAAGCGGTTCAAGTGTCTTATGATTTTAACAATTTTTGTGTGAACAAGTCAGGGGTTCCTTGCGCGTTTGAGGTGACGGCGCTGTTGGGGTTTCTTGGGGGGTTGAATTATCCTGAGAATTTGGTTAATTCGTGGAGTGGGAATGATCCTTGTGGGGGTCAGTGGTTGGGGATAAAATGTAATGTTGATGGAAAGGTGAATATGATTAATTTGCCTAATTTGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTTGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTACGGTGCCTGGTAATTGGAGTAGTTTGACATCTTTGAAATTGTTGGATCTGAGTGGAAATAACATTTCTCCTCCATTGCCTTTGTTTAAGACTGGATTGAAACCTATTGTTACTGGGAATCCCTTCTTTAATGGTGGTGCCGAAAATCCTTCATCAGGGAGCAAGAACCCATCATCTGGATCTGGGAATGTCGACCCTGCATCCGGTCAGTCCAATTCTAGTTCGACTGATTCTCTTGAAACTAAGAAATCTAAACGGAAAGGGTTGGTTTCCATTGTTGCTCCGATTGCGGGTGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAGAGCAGGAAGGGTGGCTTCCAGGCTCCAACCTCACTGGTAATTCACCCTAGGGATCCATCGTATTCGGACAGTGTTGTGAAGATTGCCGTTGCTAACAATACCAATGGAAGCATTTCCACTTTGACAGGGAGTGGTTCTGGGAGTAGGAATAGTAGTGGGAATGGGGAGTCTCATGTCATTGACGCTGGAAATCTTAGAATATCAGTTCAAGTTCTCAGGAACGTGACCAAGAATTTTGCGCCCGAGAATGAGCTCGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGAACTAAAATTGCAGTGAAACGAATGGAAGCTGGTGTCATTAGTAGCAAGGCATTGGATGAATTCCAGGCCGAGATTGCGGTTCTATCAAAAGTCCGGCACCGGCATCTGGTGTCTCTTTTGGGTTATTCTATAGAAGGTAATGAAAGGATTCTGGTGTATGAATATATGCCACAAGGGGCTCTAAGTAAGCATCTTTTCCATTGGAAAAGCCATGGACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTTAGAGCAAAGGTCTCAGATTTTGGTTTGGTAAAACTTGCTCCTGACGGTGAAAAATCTGTAGTTACCAGGCTTGCTGGGACTTTCGGATATTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTCGGGGTTGTGCTAATGGAGCTATTGACTGGATTAATGGCACTTGATGAGGACAGACCCGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGAGTATAAAATCAGATACGAAGAAGCTAATGGCTGCTATTGACAAAGTCCTTGATGTTAAGGAAGAAACATTTGAGAGCGTCTCCATCATTGCTGAGTTAGCAGGGCACTGCACAGCCAGAGAACCAGGCCAACGGCCAGAGATGGGTCATGCCGTAAATGTGCTGGCACGGCTTGTTGAAAAATGGAAACCCTTTAATGATGAGGCTGAGGAGTATTCCGGGATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACATGAGTTATATGGACCTAGAAGACAGTAAGAGCAGTATCCCCGCAAGGCCTACTGGATTTGCAGATTCTTTCACTTCAGCTGATGGGCGTTGA 2829 0.474 MLHSSLTLLFTLLFSLTTADPHEVEILRQFRNGLDNPDLLPWPDSGDDPCAWKYIFCDNKNHVNQIQAKGLNLSGPLSPNLNQLTNLFNVGLQNNRLNGPLPSFRGLSNLKYLYLDNNNFDSIPSDFFDGLQSLEVLALDNNDLNASSGGWHLPQTLQESTQLTNLSCMGCNLAGPLPEFLGTMNSLSFLKLSNNNLTGEIPLSLNDSALQVLWLNNQRGECLTGRIDVVASMVSLTSLWLHGNSFTGTIPDNIGDLSSLRELNLNGNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAVQVSYDFNNFCVNKSGVPCAFEVTALLGFLGGLNYPENLVNSWSGNDPCGGQWLGIKCNVDGKVNMINLPNLNLSGSLSPSVANLGSLVEIRLGGNDISGTVPGNWSSLTSLKLLDLSGNNISPPLPLFKTGLKPIVTGNPFFNGGAENPSSGSKNPSSGSGNVDPASGQSNSSSTDSLETKKSKRKGLVSIVAPIAGVAAAAFLLIPLYAYCFKSRKGGFQAPTSLVIHPRDPSYSDSVVKIAVANNTNGSISTLTGSGSGSRNSSGNGESHVIDAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSHGLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWSIKSDTKKLMAAIDKVLDVKEETFESVSIIAELAGHCTAREPGQRPEMGHAVNVLARLVEKWKPFNDEAEEYSGIDYSLPLNQMVKGWQEAEGKDMSYMDLEDSKSSIPARPTGFADSFTSADGR* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2027 942 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Pvu1g2027 942 SMART LRR_typ_2 411 433 IPR003591 -
Pvu1g2027 942 SMART LRR_typ_2 107 130 IPR003591 -
Pvu1g2027 942 SMART LRR_typ_2 257 280 IPR003591 -
Pvu1g2027 942 SMART LRR_typ_2 184 208 IPR003591 -
Pvu1g2027 942 SMART LRR_typ_2 233 256 IPR003591 -
Pvu1g2027 942 SMART LRR_typ_2 131 160 IPR003591 -
Pvu1g2027 942 SUPERFAMILY L domain-like 324 434 - -
Pvu1g2027 942 SUPERFAMILY Protein kinase-like (PK-like) 573 872 IPR011009 -
Pvu1g2027 942 CDD STKc_IRAK 602 875 - -
Pvu1g2027 942 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Pvu1g2027 942 MobiDBLite consensus disorder prediction 446 480 - -
Pvu1g2027 942 Gene3D Phosphorylase Kinase; domain 1 561 673 - -
Pvu1g2027 942 SMART serkin_6 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2027 942 PANTHER OSJNBA0070M12.3 PROTEIN 9 942 - -
Pvu1g2027 942 MobiDBLite consensus disorder prediction 916 942 - -
Pvu1g2027 942 Gene3D Transferase(Phosphotransferase) domain 1 674 893 - -
Pvu1g2027 942 ProSiteProfiles Protein kinase domain profile. 596 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2027 942 Gene3D Ribonuclease Inhibitor 323 443 IPR032675 -
Pvu1g2027 942 SUPERFAMILY L domain-like 20 301 - -
Pvu1g2027 942 MobiDBLite consensus disorder prediction 446 483 - -
Pvu1g2027 942 Pfam Protein kinase domain 599 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g2027 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Pvu1g2027 942 Gene3D Ribonuclease Inhibitor 20 319 IPR032675 -
Pvu1g2027 942 Pfam Leucine rich repeat N-terminal domain 324 361 IPR013210 -
Pvu1g2027 942 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Pvu1g2027 942 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 9 942 - -
Pvu1g2027 942 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Pvu1g2027 942 Pfam Leucine rich repeat 87 144 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2027 Pvu-Chr1 46125630 46129246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2027 81 909 Receptor kinase-like Gene Family AT1G55610 30.725 6.45e-80 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pvu1g2027 PK_Tyr_Ser-Thr 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2027 - - gmx:100305366 1535.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2027 1 46125630 46129246 Pvu7g2762 7 50655488 50659577 PCT