Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2010 ATGGGTAAGAAAATGAAGCTTCCTTCCCTCCTCCACAAGAACTCACACCCCAACACCACCGCCAAACCTTCTTCCACTTCCTGGCCCTGGCCCTCTTGCCACCAACCTCGAACCCTCTCTTTTCGAGCCCCAAACGACGTCGCTTTCAAAACCATCAACCCCGCCTACTTGGACATGCCCGAGAGCTCCCACTCCTTCTTCACTGTCTCTCCCGACTCCGGAAGCTTCTCAACCGCTTCAGAAGAAGATTCTAGAAGACCCGATTCTCTTGAGACCCTCATTCGCCCCTTGCGTTCTGACCGTTTGTTCTTCCAGCCCGACCAGACAAGTTCCATATTAGAGTCCAAAGCAGGAACATCAGCACCAACACCAACAGAAAAACCAACGGCAACAACAACAGAAAAACCTACCGCAGCAACAACAACAACGTTGCCCTTCGAAGACAGCGTGGTTATGTCTGTAGAGTCTCAGGACCCTTACGTGGACTTCCTCAGGTCCATGGAGGAGATGGTAGAGGCCCAGTGCGTTAAAGACTGGGATGGTCTCCAAGAGCTTTTGTGTTGGTATTTAAAAGTCAATGGAAAAAGCAACCATGGTTATATTGTTGGTGCTTTCATTGATTTATTGGTGACTTTTTCTTCCTCCACCACCGGTTCTTCTTCTGATATAAACTCTCATTCTCCTTCCTCCCCTTTATCATTCTACAGCTCTTCTCTCTCTTCCTCTTGCAGCACTCGCTGTGTTTCCTGTTTGGAAGCTGAGGACGAGGTTCATATAGCTACCACTAGTTCTTCTTTCTTGTTAGAACAAGTTAGGAAAGACAGGACTTCGTCTTCATCTTCATCCTCTTTGAATTAG 858 0.479 MGKKMKLPSLLHKNSHPNTTAKPSSTSWPWPSCHQPRTLSFRAPNDVAFKTINPAYLDMPESSHSFFTVSPDSGSFSTASEEDSRRPDSLETLIRPLRSDRLFFQPDQTSSILESKAGTSAPTPTEKPTATTTEKPTAATTTTLPFEDSVVMSVESQDPYVDFLRSMEEMVEAQCVKDWDGLQELLCWYLKVNGKSNHGYIVGAFIDLLVTFSSSTTGSSSDINSHSPSSPLSFYSSSLSSSCSTRCVSCLEAEDEVHIATTSSSFLLEQVRKDRTSSSSSSSLN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2010 285 Pfam Transcriptional repressor, ovate 156 211 IPR006458 -
Pvu1g2010 285 ProSiteProfiles OVATE domain profile. 150 211 IPR006458 -
Pvu1g2010 285 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 150 212 IPR006458 -
Pvu1g2010 285 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 250 - -
Pvu1g2010 285 MobiDBLite consensus disorder prediction 1 32 - -
Pvu1g2010 285 MobiDBLite consensus disorder prediction 113 140 - -
Pvu1g2010 285 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 250 IPR038933 GO:0045892
Pvu1g2010 285 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2010 Pvu-Chr1 45997952 45998951 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pvu1g2010 Ovate 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2010 - - vun:114179778 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2010 1 45997952 45998951 Pvu7g0244 7 1711706 1712803 ECH
Pvu1g2010 1 45997952 45998951 Pvu1g2010 1 45997952 45998951 ECH
Pvu1g2010 1 45997952 45998951 Pvu7g2780 7 50813520 50814239 PCT